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authorzsloan2022-03-22 15:28:11 -0500
committerGitHub2022-03-22 15:28:11 -0500
commitde546b4fb148bf9f51e4262d6cabf169b504ba3c (patch)
treebb1c31bfcca05646bc0aa497cb29999cc34a63fc /wqflask/tests
parent32cb57b82db328bc84753af9d25e9aaa1bd31152 (diff)
parent218e62488de585c3934809f3eb42847d27969764 (diff)
downloadgenenetwork2-de546b4fb148bf9f51e4262d6cabf169b504ba3c.tar.gz
Merge pull request #608 from zsloan/feature/add_rqtl_pairscan
Feature/add rqtl pairscan
Diffstat (limited to 'wqflask/tests')
-rw-r--r--wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py4
-rw-r--r--wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py2
2 files changed, 3 insertions, 3 deletions
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
index 58a44b2a..f2ea22c0 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
@@ -114,7 +114,7 @@ class TestGemmaMapping(unittest.TestCase):
create_trait.side_effect = create_trait_side_effect
group = MockGroup({"name": "group_X", "samplelist": samplelist})
- this_dataset = AttributeSetter({"group": group, "name": "A"})
+ this_dataset = AttributeSetter({"group": group, "name": "dataset1_name"})
flat_files.return_value = "Home/Genenetwork"
with mock.patch("builtins.open", mock.mock_open())as mock_open:
@@ -134,7 +134,7 @@ class TestGemmaMapping(unittest.TestCase):
flat_files.assert_called_once_with('mapping')
mock_open.assert_called_once_with(
- 'Home/Genenetwork/COVAR_anFZ_LfZYV0Ulywo+7tRCw.txt', 'w')
+ 'Home/Genenetwork/COVAR_npKxIOnq3azWdgYixtd9IQ.txt', 'w')
filehandler = mock_open()
filehandler.write.assert_has_calls([mock.call(
'-9\t'), mock.call('-9\t'), mock.call('-9\t'), mock.call('-9\t'), mock.call('\n')])
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
index 9d13e943..b4423d8f 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
@@ -32,7 +32,7 @@ class TestRqtlMapping(unittest.TestCase):
"results" : []}
results = run_rqtl(trait_name="the_trait", vals=[], samples=[],
- dataset=dataset, mapping_scale="cM", model="normal", method="hk",
+ dataset=dataset, pair_scan=False, mapping_scale="cM", model="normal", method="hk",
num_perm=5, perm_strata_list=[], do_control="false", control_marker="",
manhattan_plot=True, cofactors="")