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| author | Alexanderkabui | 2021-01-06 08:50:30 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2021-01-06 11:22:15 +0300 |
| commit | 4203e9609dcf59fa7369e9e0dde02d0da3c8e32f (patch) | |
| tree | ce6d9f89406d2acc7b951d9fc604e375ef5a5d4a /wqflask/tests | |
| parent | b605f52440e84909631b6afdf510a9e513260901 (diff) | |
| download | genenetwork2-4203e9609dcf59fa7369e9e0dde02d0da3c8e32f.tar.gz | |
update tests for snp_browser
Diffstat (limited to 'wqflask/tests')
| -rw-r--r-- | wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py | 15 |
1 files changed, 11 insertions, 4 deletions
diff --git a/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py b/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py index 496d228f..7fa96dba 100644 --- a/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py +++ b/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py @@ -21,18 +21,25 @@ class TestSnpBrowser(unittest.TestCase): "transcript": "false", "exon": "false", "domain_2": "true", "function": "false", "function_details": "true"} strains = {"mouse": ["S1", "S2", "S3", "S4", "S5"], "rat": []} expected_results = ([['Index', 'SNP ID', 'Chr', 'Mb', 'Alleles', 'ConScore', - 'Domain 1', 'Domain 2', 'Details'], ['S1', 'S2', 'S3', 'S4', 'S5']], 5) + 'Domain 1', 'Domain 2', 'Details'], + ['S1', 'S2', 'S3', 'S4', 'S5']], 5, + ['index', 'snp_name', 'chr', 'mb_formatted', 'alleles', + 'conservation_score', 'domain_1', 'domain_2', + 'function_details', 'S1', 'S2', 'S3', 'S4', 'S5']) results_with_snp = get_header_list( variant_type="SNP", strains=strains, species="Mouse", empty_columns=empty_columns) results_with_indel = get_header_list( variant_type="InDel", strains=strains, species="rat", empty_columns=[]) expected_results_with_indel = ( - ['Index', 'ID', 'Type', 'InDel Chr', 'Mb Start', - 'Mb End', 'Strand', 'Size', 'Sequence', 'Source'], 0) + ['Index', 'ID', 'Type', 'InDel Chr', 'Mb Start', + 'Mb End', 'Strand', 'Size', 'Sequence', 'Source'], 0, + ['index', 'indel_name', 'indel_type', 'indel_chr', 'indel_mb_s', + 'indel_mb_e', 'indel_strand', 'indel_size', 'indel_sequence', 'source_name']) self.assertEqual(expected_results, results_with_snp) - self.assertEqual(results_with_indel, expected_results_with_indel) + # self.assertEqual(results_with_indel, expected_results_with_indel) + self.assertEqual(expected_results_with_indel, results_with_indel) @mock.patch("wqflask.snp_browser.snp_browser.g") def test_get_gene_id(self, mock_db): |