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author | Pjotr Prins | 2020-07-25 08:24:33 +0100 |
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committer | Pjotr Prins | 2020-07-25 08:24:33 +0100 |
commit | 9f8beacddb71aac9905c896b9d81caf45b4735a0 (patch) | |
tree | 1f3ea2b1bdb6835a6c172b739e6872bf59af6181 /wqflask/tests/utility | |
parent | c249ba2ef7d691227da8864838dfc97db68d4084 (diff) | |
parent | f66da35a09cbb8da13cfb142cbe3ff208404970b (diff) | |
download | genenetwork2-9f8beacddb71aac9905c896b9d81caf45b4735a0.tar.gz |
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
Diffstat (limited to 'wqflask/tests/utility')
-rw-r--r-- | wqflask/tests/utility/__init__.py | 0 | ||||
-rw-r--r-- | wqflask/tests/utility/test_chunks.py | 19 | ||||
-rw-r--r-- | wqflask/tests/utility/test_corestats.py | 55 | ||||
-rw-r--r-- | wqflask/tests/utility/test_corr_result_helpers.py | 32 | ||||
-rw-r--r-- | wqflask/tests/utility/test_formatting.py | 33 |
5 files changed, 139 insertions, 0 deletions
diff --git a/wqflask/tests/utility/__init__.py b/wqflask/tests/utility/__init__.py new file mode 100644 index 00000000..e69de29b --- /dev/null +++ b/wqflask/tests/utility/__init__.py diff --git a/wqflask/tests/utility/test_chunks.py b/wqflask/tests/utility/test_chunks.py new file mode 100644 index 00000000..8d90a1ec --- /dev/null +++ b/wqflask/tests/utility/test_chunks.py @@ -0,0 +1,19 @@ +"""Test chunking""" + +import unittest + +from utility.chunks import divide_into_chunks + + +class TestChunks(unittest.TestCase): + "Test Utility method for chunking" + def test_divide_into_chunks(self): + "Check that a list is chunked correctly" + self.assertEqual(divide_into_chunks([1, 2, 7, 3, 22, 8, 5, 22, 333], 3), + [[1, 2, 7], [3, 22, 8], [5, 22, 333]]) + self.assertEqual(divide_into_chunks([1, 2, 7, 3, 22, 8, 5, 22, 333], 4), + [[1, 2, 7], [3, 22, 8], [5, 22, 333]]) + self.assertEqual(divide_into_chunks([1, 2, 7, 3, 22, 8, 5, 22, 333], 5), + [[1, 2], [7, 3], [22, 8], [5, 22], [333]]) + self.assertEqual(divide_into_chunks([], 5), + [[]]) diff --git a/wqflask/tests/utility/test_corestats.py b/wqflask/tests/utility/test_corestats.py new file mode 100644 index 00000000..cf91a248 --- /dev/null +++ b/wqflask/tests/utility/test_corestats.py @@ -0,0 +1,55 @@ +"""Test Core Stats""" + +import unittest + +from utility.corestats import Stats + + +class TestChunks(unittest.TestCase): + "Test Utility method for chunking" + + def setUp(self): + self.stat_test = Stats((x for x in range(1, 11))) + + def test_stats_sum(self): + """ Test sequence sum """ + self.assertEqual(self.stat_test.sum(), 55) + self.stat_test = Stats([]) + self.assertEqual(self.stat_test.sum(), None) + + def test_stats_count(self): + """ Test sequence count """ + self.assertEqual(self.stat_test.count(), 10) + self.stat_test = Stats([]) + self.assertEqual(self.stat_test.count(), 0) + + def test_stats_min(self): + """ Test min value in sequence""" + self.assertEqual(self.stat_test.min(), 1) + self.stat_test = Stats([]) + self.assertEqual(self.stat_test.min(), None) + + def test_stats_max(self): + """ Test max value in sequence """ + self.assertEqual(self.stat_test.max(), 10) + self.stat_test = Stats([]) + self.assertEqual(self.stat_test.max(), None) + + def test_stats_avg(self): + """ Test avg of sequence """ + self.assertEqual(self.stat_test.avg(), 5.5) + self.stat_test = Stats([]) + self.assertEqual(self.stat_test.avg(), None) + + def test_stats_stdev(self): + """ Test standard deviation of sequence """ + self.assertEqual(self.stat_test.stdev(), 3.0276503540974917) + self.stat_test = Stats([]) + self.assertEqual(self.stat_test.stdev(), None) + + def test_stats_percentile(self): + """ Test percentile of sequence """ + self.assertEqual(self.stat_test.percentile(20), 3.0) + self.assertEqual(self.stat_test.percentile(101), None) + self.stat_test = Stats([]) + self.assertEqual(self.stat_test.percentile(20), None) diff --git a/wqflask/tests/utility/test_corr_result_helpers.py b/wqflask/tests/utility/test_corr_result_helpers.py new file mode 100644 index 00000000..e196fbdf --- /dev/null +++ b/wqflask/tests/utility/test_corr_result_helpers.py @@ -0,0 +1,32 @@ +""" Test correlation helper methods """ + +import unittest +from utility.corr_result_helpers import normalize_values, common_keys, normalize_values_with_samples + + +class TestCorrelationHelpers(unittest.TestCase): + """Test methods for normalising lists""" + + def test_normalize_values(self): + """Test that a list is normalised correctly""" + self.assertEqual( + normalize_values([2.3, None, None, 3.2, 4.1, 5], [ + 3.4, 7.2, 1.3, None, 6.2, 4.1]), + ([2.3, 4.1, 5], [3.4, 6.2, 4.1], 3) + ) + + def test_common_keys(self): + """Test that common keys are returned as a list""" + a = dict(BXD1=9.113, BXD2=9.825, BXD14=8.985, BXD15=9.300) + b = dict(BXD1=9.723, BXD3=9.825, BXD14=9.124, BXD16=9.300) + self.assertEqual(sorted(common_keys(a, b)), ['BXD1', 'BXD14']) + + def test_normalize_values_with_samples(self): + """Test that a sample(dict) is normalised correctly""" + self.assertEqual( + normalize_values_with_samples( + dict(BXD1=9.113, BXD2=9.825, BXD14=8.985, + BXD15=9.300, BXD20=9.300), + dict(BXD1=9.723, BXD3=9.825, BXD14=9.124, BXD16=9.300)), + (({'BXD1': 9.113, 'BXD14': 8.985}, {'BXD1': 9.723, 'BXD14': 9.124}, 2)) + ) diff --git a/wqflask/tests/utility/test_formatting.py b/wqflask/tests/utility/test_formatting.py new file mode 100644 index 00000000..9d3033d1 --- /dev/null +++ b/wqflask/tests/utility/test_formatting.py @@ -0,0 +1,33 @@ +import unittest +from utility.formatting import numify, commify + + +class TestFormatting(unittest.TestCase): + """Test formatting numbers by numifying or commifying""" + + def test_numify(self): + "Test that a number is correctly converted to a English readable string" + self.assertEqual(numify(1, 'item', 'items'), + 'one item') + self.assertEqual(numify(2, 'book'), 'two') + self.assertEqual(numify(2, 'book', 'books'), 'two books') + self.assertEqual(numify(0, 'book', 'books'), 'zero books') + self.assertEqual(numify(0), 'zero') + self.assertEqual(numify(5), 'five') + self.assertEqual(numify(14, 'book', 'books'), '14 books') + self.assertEqual(numify(999, 'book', 'books'), '999 books') + self.assertEqual(numify(1000000, 'book', 'books'), '1,000,000 books') + self.assertEqual(numify(1956), '1956') + + def test_commify(self): + "Test that commas are added correctly" + self.assertEqual(commify(1), '1') + self.assertEqual(commify(123), '123') + self.assertEqual(commify(1234), '1234') + self.assertEqual(commify(12345), '12,345') + self.assertEqual(commify(1234567890), '1,234,567,890') + self.assertEqual(commify(123.0), '123.0') + self.assertEqual(commify(1234.5), '1234.5') + self.assertEqual(commify(1234.56789), '1234.56789') + self.assertEqual(commify(123456.789), '123,456.789') + self.assertEqual(commify(None), None) |