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| author | Alexander Kabui | 2020-11-28 16:23:53 +0300 |
|---|---|---|
| committer | Alexander Kabui | 2020-11-28 16:23:53 +0300 |
| commit | c96c1db5660367f1f86cfa76309c87866e79bf79 (patch) | |
| tree | 4ff54555c7cff2ecdc098d316108eadd9c37b6ad /wqflask/tests/unit | |
| parent | 7f35213b64707e7c61affb6fa376f561200ac1d6 (diff) | |
| download | genenetwork2-c96c1db5660367f1f86cfa76309c87866e79bf79.tar.gz | |
modify test for plink mapping and rqtl_mapping
Diffstat (limited to 'wqflask/tests/unit')
| -rw-r--r-- | wqflask/tests/unit/wqflask/marker_regression/test_plink_mapping.py | 3 | ||||
| -rw-r--r-- | wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py | 4 |
2 files changed, 4 insertions, 3 deletions
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_plink_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_plink_mapping.py index 428f45b9..5eec93f1 100644 --- a/wqflask/tests/unit/wqflask/marker_regression/test_plink_mapping.py +++ b/wqflask/tests/unit/wqflask/marker_regression/test_plink_mapping.py @@ -14,8 +14,9 @@ class AttributeSetter: setattr(self, key, val) class TestPlinkMapping(unittest.TestCase): + def test_build_line_list(self): - """testing for building line list""" + """test for building line list""" line_1 = "this is line one test" irregular_line = " this is an, irregular line " exp_line1 = ["this", "is", "line", "one", "test"] diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py index 69f53721..c585f1df 100644 --- a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py +++ b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py @@ -19,10 +19,10 @@ class TestRqtlMapping(unittest.TestCase): @mock.patch("wqflask.marker_regression.rqtl_mapping.logger") def test_get_trait_data(self,mock_logger,mock_db): """test for getting trait data_type return True""" - caller_value="""SELECT value FROM TraitMetadata WHERE type='trait_data_type'""" + query_value="""SELECT value FROM TraitMetadata WHERE type='trait_data_type'""" mock_db.db.execute.return_value.fetchone.return_value=["""{"type":"trait_data_type","name":"T1","traid_id":"fer434f"}"""] results=get_trait_data_type("traid_id") - mock_db.db.execute.assert_called_with(caller_value) + mock_db.db.execute.assert_called_with(query_value) self.assertEqual(results,"fer434f") def test_sanitize_rqtl_phenotype(self): |