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authorBonfaceKilz2021-04-30 13:15:10 +0300
committerBonfaceKilz2021-04-30 13:45:15 +0300
commit99f8bdbb70e4e00df6671c3f20db4857ffa96d6f (patch)
treeb2e672d66ff5e43e1a2162b62493ceed7a158818 /wqflask/tests/unit
parent4e65b73a0f903834f8dbd02d11c49b75d7c935c7 (diff)
downloadgenenetwork2-99f8bdbb70e4e00df6671c3f20db4857ffa96d6f.tar.gz
autopep8: Run autopep8 100 times with target rules
Rules used are: E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,E242, E251,E252,E26,E265,E266,E27,E301,E302,E303,E304,E305,E306, E401,E501,E70,E701,W291,W292,W293,W391,W504,E101,E11,E121, E122,E123,E124,E125,E126,E127,E128,E129,E131,E133
Diffstat (limited to 'wqflask/tests/unit')
-rw-r--r--wqflask/tests/unit/wqflask/marker_regression/test_qtlreaper_mapping.py7
-rw-r--r--wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py4
2 files changed, 6 insertions, 5 deletions
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_qtlreaper_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_qtlreaper_mapping.py
index 93848a84..8b4337ec 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_qtlreaper_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_qtlreaper_mapping.py
@@ -9,13 +9,14 @@ from wqflask.marker_regression.qtlreaper_mapping import gen_pheno_txt_file
class TestQtlReaperMapping(unittest.TestCase):
@mock.patch("wqflask.marker_regression.qtlreaper_mapping.TEMPDIR", "/home/user/data")
def test_gen_pheno_txt_file(self):
- vals = ["V1", "x", "V4", "V3","x"]
- samples = ["S1", "S2", "S3", "S4","S5"]
+ vals = ["V1", "x", "V4", "V3", "x"]
+ samples = ["S1", "S2", "S3", "S4", "S5"]
trait_filename = "trait_file"
with mock.patch("builtins.open", mock.mock_open())as mock_open:
gen_pheno_txt_file(samples=samples, vals=vals,
trait_filename=trait_filename)
- mock_open.assert_called_once_with("/home/user/data/gn2/trait_file.txt", "w")
+ mock_open.assert_called_once_with(
+ "/home/user/data/gn2/trait_file.txt", "w")
filehandler = mock_open()
write_calls = [mock.call('Trait\t'), mock.call(
'S1\tS3\tS4\n'), mock.call('T1\t'), mock.call('V1\tV4\tV3')]
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
index 68686e27..91d2c587 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
@@ -28,7 +28,7 @@ class TestRqtlMapping(unittest.TestCase):
def test_sanitize_rqtl_phenotype(self):
"""test for sanitizing rqtl phenotype"""
- vals = ['f', "x", "r", "x","x"]
+ vals = ['f', "x", "r", "x", "x"]
results = sanitize_rqtl_phenotype(vals)
expected_phenotype_string = 'c(f,NA,r,NA,NA)'
@@ -36,7 +36,7 @@ class TestRqtlMapping(unittest.TestCase):
def test_sanitize_rqtl_names(self):
"""test for sanitzing rqtl names"""
- vals = ['f', "x", "r", "x","x"]
+ vals = ['f', "x", "r", "x", "x"]
expected_sanitized_name = "c('f',NA,'r',NA,NA)"
results = sanitize_rqtl_names(vals)
self.assertEqual(expected_sanitized_name, results)