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author | Munyoki Kilyungi | 2023-03-20 12:18:14 +0300 |
---|---|---|
committer | BonfaceKilz | 2023-03-20 22:05:46 +0300 |
commit | c8c091c8e2833ce022c316cf498122b2af720f49 (patch) | |
tree | 9472c5e678688b87081da90943bd2394d8d2a074 /wqflask/tests/integration | |
parent | 6e45510c3ee685a960db594aef70661220bebe60 (diff) | |
download | genenetwork2-c8c091c8e2833ce022c316cf498122b2af720f49.tar.gz |
Disable editing case-attributes
ATM, editing case-attributes is very buggy.
* wqflask/tests/integration/wqflask/test_metadata_edits.py: Delete.
* wqflask/wqflask/decorators.py: Remove:
gn3.authentication.get_groups_by_user_uid import.
(case_attributes_edit_access): Delete.
* wqflask/tests/integration/wqflask/test_metadata_edits.py: Remove
wqflask.decorators.case_attributes_edit_access,
gn3.db.case_attributes.get_case_attributes,
gn3.db.case_attributes.get_unreviewed_diffs,
gn3.db.case_attributes.insert_case_attribute_audit,
gn3.db.case_attributes.reject_case_attribute and
gn3.db.case_attributes.approve_case_attribute.
(display_phenotype_metadata): Remove headers arg when rendering
template.
(update_phenotype): Remove case attribute headers list when updating a
phenotype.
(show_case_attribute_columns, update_case_attributes): Delete.
(reject_case_attribute_data, approve_case_attribute_data): Ditto.
* wqflask/wqflask/templates/edit_phenotype.html: Remove link that
shows all the listed case-attributes.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'wqflask/tests/integration')
-rw-r--r-- | wqflask/tests/integration/wqflask/test_metadata_edits.py | 43 |
1 files changed, 0 insertions, 43 deletions
diff --git a/wqflask/tests/integration/wqflask/test_metadata_edits.py b/wqflask/tests/integration/wqflask/test_metadata_edits.py deleted file mode 100644 index ba7a18c9..00000000 --- a/wqflask/tests/integration/wqflask/test_metadata_edits.py +++ /dev/null @@ -1,43 +0,0 @@ -"""Tests for wqflask/wqflask/metadata_edits.py""" -import unittest -from unittest import mock - -from wqflask import app - - -class MetadataEditsTest(unittest.TestCase): - """Test Cases for MetadataEdits""" - - def setUp(self): - self.app = app.test_client() - self.app_context = app.app_context() - self.app_context.push() - - def tearDown(self): - self.app_context.pop() - - @unittest.skip("TO-FIX or Delete") - @mock.patch("wqflask.metadata_edits.database_connection") - @mock.patch("wqflask.metadata_edits.get_case_attributes") - def test_show_case_attributes(self, mock_case_attrs, mock_conn): - """Test that case attributes are displayed correctly""" - mock_case_attrs.return_value = { - "Condition (1)": "", - "Tissue": "", - "Age": "Cum sociis natoque penatibus et magnis dis", - "Condition (4)": "Description A", - "Condition (5)": "Description B", - } - response = self.app.get( - "/datasets/case-attributes", follow_redirects=True - ).data.decode() - self.assertIn( - "<td>Condition (1)</td><td>No description</td>", response - ) - self.assertIn("<td>Tissue</td><td>No description</td>", response) - self.assertIn( - "<td>Age</td><td>Cum sociis natoque penatibus et magnis dis</td>", - response, - ) - self.assertIn("<td>Condition (4)</td><td>Description A</td>", response) - self.assertIn("<td>Condition (5)</td><td>Description B</td>", response) |