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authorBonfaceKilz2020-08-03 15:55:32 +0300
committerBonfaceKilz2020-08-03 16:44:49 +0300
commit899cf35a1dce7ad18645d00238fb39917f8e6e4f (patch)
tree817b6d037a7ddd01974b4fc0989dfd4c6038c9c7 /wqflask/tests/api
parent31e582e4d1e3fc2d36a72f9c775bde40ab61d878 (diff)
downloadgenenetwork2-899cf35a1dce7ad18645d00238fb39917f8e6e4f.tar.gz
Add tests for "get_datasets"
* wqflask/tests/api/test_gen_menu.py: Add new tests
Diffstat (limited to 'wqflask/tests/api')
-rw-r--r--wqflask/tests/api/test_gen_menu.py74
1 files changed, 74 insertions, 0 deletions
diff --git a/wqflask/tests/api/test_gen_menu.py b/wqflask/tests/api/test_gen_menu.py
index 0379e297..a606a300 100644
--- a/wqflask/tests/api/test_gen_menu.py
+++ b/wqflask/tests/api/test_gen_menu.py
@@ -5,6 +5,7 @@ import mock
from wqflask.api.gen_menu import get_species
from wqflask.api.gen_menu import get_groups
from wqflask.api.gen_menu import get_types
+from wqflask.api.gen_menu import get_datasets
from wqflask.api.gen_menu import phenotypes_exist
from wqflask.api.gen_menu import genotypes_exist
from wqflask.api.gen_menu import build_datasets
@@ -30,6 +31,41 @@ class TestGenMenu(unittest.TestCase):
]
}
+ self.test_type = {
+ 'mouse': {
+ 'H_T2': [('Phenotypes',
+ 'Traits and Cofactors',
+ 'Phenotypes'),
+ ('Genotypes',
+ 'DNA Markers and SNPs',
+ 'Genotypes'),
+ ['M', 'M', 'Molecular Trait Datasets']],
+ 'H_T1': [('Phenotypes',
+ 'Traits and Cofactors',
+ 'Phenotypes'),
+ ('Genotypes',
+ 'DNA Markers and SNPs',
+ 'Genotypes'),
+ ['M', 'M', 'Molecular Trait Datasets']]
+ },
+ 'human': {
+ 'HLC': [('Phenotypes',
+ 'Traits and Cofactors',
+ 'Phenotypes'),
+ ('Genotypes',
+ 'DNA Markers and SNPs',
+ 'Genotypes'),
+ ['M', 'M', 'Molecular Trait Datasets']],
+ 'BXD': [('Phenotypes',
+ 'Traits and Cofactors',
+ 'Phenotypes'),
+ ('Genotypes',
+ 'DNA Markers and SNPs',
+ 'Genotypes'),
+ ['M', 'M', 'Molecular Trait Datasets']]
+ }
+ }
+
@mock.patch('wqflask.api.gen_menu.g')
def test_get_species(self, db_mock):
"""Test that assertion is raised when dataset and dataset_name are defined"""
@@ -309,3 +345,41 @@ class TestGenMenu(unittest.TestCase):
'BXD': [['M', 'M', 'Molecular Trait Datasets']]}}
self.assertEqual(get_types(self.test_group),
expected_result)
+
+ @mock.patch('wqflask.api.gen_menu.build_datasets')
+ def test_get_datasets_with_existent_datasets(self,
+ build_datasets_mock):
+ """Test correct dataset is returned with existent build_datasets"""
+ build_datasets_mock.return_value = "Test"
+ expected_result = {
+ 'mouse': {
+ 'H_T2': {'Genotypes': 'Test',
+ 'M': 'Test',
+ 'Phenotypes': 'Test'},
+ 'H_T1': {'Genotypes': 'Test',
+ 'M': 'Test',
+ 'Phenotypes': 'Test'}},
+ 'human': {'HLC': {'Genotypes': 'Test',
+ 'M': 'Test',
+ 'Phenotypes': 'Test'},
+ 'BXD': {'Genotypes': 'Test',
+ 'M': 'Test',
+ 'Phenotypes': 'Test'}}}
+ self.maxDiff = None
+ self.assertEqual(get_datasets(self.test_type),
+ expected_result)
+
+ @mock.patch('wqflask.api.gen_menu.build_datasets')
+ def test_get_datasets_with_non_existent_datasets(self,
+ build_datasets_mock):
+ """Test correct dataset is returned with non-existent build_datasets"""
+ build_datasets_mock.return_value = None
+ expected_result = {
+ 'mouse': {
+ 'H_T2': {},
+ 'H_T1': {}},
+ 'human': {'HLC': {},
+ 'BXD': {}}}
+ self.assertEqual(get_datasets(self.test_type),
+ expected_result)
+