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authorBonfaceKilz2020-08-03 13:10:31 +0300
committerBonfaceKilz2020-08-03 16:44:48 +0300
commitbde13316e67bb56eb4a00b365ebb343ab6d00274 (patch)
tree08c381666835c79874822a2728c1441c517f50a7 /wqflask/tests/api
parent61634e932f8e03f5f53a94a56ff23f50dba891d2 (diff)
downloadgenenetwork2-bde13316e67bb56eb4a00b365ebb343ab6d00274.tar.gz
Add tests for "get_types"
* wqflask/tests/api/test_gen_menu.py: Add new tests
Diffstat (limited to 'wqflask/tests/api')
-rw-r--r--wqflask/tests/api/test_gen_menu.py105
1 files changed, 105 insertions, 0 deletions
diff --git a/wqflask/tests/api/test_gen_menu.py b/wqflask/tests/api/test_gen_menu.py
index 24899765..0379e297 100644
--- a/wqflask/tests/api/test_gen_menu.py
+++ b/wqflask/tests/api/test_gen_menu.py
@@ -4,6 +4,7 @@ import mock
from wqflask.api.gen_menu import get_species
from wqflask.api.gen_menu import get_groups
+from wqflask.api.gen_menu import get_types
from wqflask.api.gen_menu import phenotypes_exist
from wqflask.api.gen_menu import genotypes_exist
from wqflask.api.gen_menu import build_datasets
@@ -204,3 +205,107 @@ class TestGenMenu(unittest.TestCase):
"ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id " +
"ORDER BY Tissue.Name"
)
+
+ @mock.patch('wqflask.api.gen_menu.build_types')
+ @mock.patch('wqflask.api.gen_menu.genotypes_exist')
+ @mock.patch('wqflask.api.gen_menu.phenotypes_exist')
+ def test_get_types_with_existing_genotype_and_phenotypes(
+ self,
+ phenotypes_exist_mock,
+ genotypes_exist_mock,
+ build_types_mock):
+ """Test that build types are constructed correctly if phenotypes and genotypes
+ exist
+
+ """
+ phenotypes_exist_mock.return_value = True
+ genotypes_exist_mock.return_value = True
+
+ expected_result = {
+ 'mouse': {
+ 'H_T2': [('Phenotypes',
+ 'Traits and Cofactors',
+ 'Phenotypes'),
+ ('Genotypes',
+ 'DNA Markers and SNPs',
+ 'Genotypes'),
+ ['M', 'M', 'Molecular Trait Datasets']],
+ 'H_T1': [('Phenotypes',
+ 'Traits and Cofactors',
+ 'Phenotypes'),
+ ('Genotypes',
+ 'DNA Markers and SNPs',
+ 'Genotypes'),
+ ['M', 'M', 'Molecular Trait Datasets']]
+ },
+ 'human': {
+ 'HLC': [('Phenotypes',
+ 'Traits and Cofactors',
+ 'Phenotypes'),
+ ('Genotypes',
+ 'DNA Markers and SNPs',
+ 'Genotypes'),
+ ['M', 'M', 'Molecular Trait Datasets']],
+ 'BXD': [('Phenotypes',
+ 'Traits and Cofactors',
+ 'Phenotypes'),
+ ('Genotypes',
+ 'DNA Markers and SNPs',
+ 'Genotypes'),
+ ['M', 'M', 'Molecular Trait Datasets']]
+ }
+ }
+
+ build_types_mock.return_value = [
+ ['M', 'M', 'Molecular Trait Datasets']
+ ]
+ self.assertEqual(get_types(self.test_group), expected_result)
+
+ @mock.patch('wqflask.api.gen_menu.build_types')
+ @mock.patch('wqflask.api.gen_menu.genotypes_exist')
+ @mock.patch('wqflask.api.gen_menu.phenotypes_exist')
+ def test_get_types_with_buildtype_and_non_existent_genotype_and_phenotypes(
+ self,
+ phenotypes_exist_mock,
+ genotypes_exist_mock,
+ build_types_mock):
+ """Test that build types are constructed correctly if phenotypes_exist and
+ genotypes_exist are false but build_type is falsy
+
+ """
+ phenotypes_exist_mock.return_value = False
+ genotypes_exist_mock.return_value = False
+
+ build_types_mock.return_value = []
+ self.assertEqual(get_types(self.test_group), {
+ 'mouse': {},
+ 'human': {}
+ })
+
+ @mock.patch('wqflask.api.gen_menu.build_types')
+ @mock.patch('wqflask.api.gen_menu.genotypes_exist')
+ @mock.patch('wqflask.api.gen_menu.phenotypes_exist')
+ def test_get_types_with_non_existent_genotype_phenotypes_and_buildtype(
+ self,
+ phenotypes_exist_mock,
+ genotypes_exist_mock,
+ build_types_mock):
+ """Test that build types are constructed correctly if phenotypes_exist,
+ genotypes_exist and build_types are truthy
+
+ """
+ phenotypes_exist_mock.return_value = False
+ genotypes_exist_mock.return_value = False
+
+ build_types_mock.return_value = [
+ ['M', 'M', 'Molecular Trait Datasets']
+ ]
+ expected_result = {
+ 'mouse': {
+ 'H_T2': [['M', 'M', 'Molecular Trait Datasets']],
+ 'H_T1': [['M', 'M', 'Molecular Trait Datasets']]},
+ 'human': {
+ 'HLC': [['M', 'M', 'Molecular Trait Datasets']],
+ 'BXD': [['M', 'M', 'Molecular Trait Datasets']]}}
+ self.assertEqual(get_types(self.test_group),
+ expected_result)