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authorzsloan2015-06-26 18:29:49 +0000
committerzsloan2015-06-26 18:29:49 +0000
commitbaff5eb1e890a4a8b33fb1917a1c17d3b1737959 (patch)
treed20bcde39537a75dde7b696f43a925f459f23985 /wqflask/secure_server.py
parentd9b6def148fae5331929b6d0427804e675a8a594 (diff)
downloadgenenetwork2-baff5eb1e890a4a8b33fb1917a1c17d3b1737959.tar.gz
Fixed bug where mapping results sometimes wouldn't display. This would occur
due to a chromosome (in this case the last) not having any markers. Improved the way plink gets its path/command to use a method similar to the one Pjotr used with pylmm. I'll also do this for the other mapping methods. Fixed issue where the Y axis would always say LOD score. It now says LRS for mapping methods that return LRS Switched interval mapping (qtl reaper) to use the marker_regression template and removed the interval_mapping template (since it's unnecessary) Some commented out changes remain (in show_trait_mapping_tools and create_lodchart) from when I was attempting to open the mapping results in a new page. I had resolved every issue but the mapping javascript (lod_chart) not being able to access js_data (which has all the result data; markers, p-values, etc). I'm pretty sure that this is because js_data was inserted into the html after the page was loaded while the chart code ran immediately. I experimented with adding a short timeout to the mapping javascript and data table javascript, but while it worked for the table it did not work for the mapping figure. I don't know why this is.
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