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| author | Lei Yan | 2014-02-04 12:58:00 -0600 |
|---|---|---|
| committer | Lei Yan | 2014-02-04 12:58:00 -0600 |
| commit | a72c0f6426b50b87e3f940c13e91541e53af1cd1 (patch) | |
| tree | 8357731c433fe204f52598b1bca68d7bed7e17cf /wqflask/maintenance | |
| parent | 1a9a509e0b73e9904b3f41246f3fc7f141375efe (diff) | |
| download | genenetwork2-a72c0f6426b50b87e3f940c13e91541e53af1cd1.tar.gz | |
On branch master
Diffstat (limited to 'wqflask/maintenance')
| -rw-r--r-- | wqflask/maintenance/dataset/probesets.py | 17 | ||||
| -rw-r--r-- | wqflask/maintenance/dataset/utilities.py | 4 |
2 files changed, 17 insertions, 4 deletions
diff --git a/wqflask/maintenance/dataset/probesets.py b/wqflask/maintenance/dataset/probesets.py index 4da2b2ef..23257f7e 100644 --- a/wqflask/maintenance/dataset/probesets.py +++ b/wqflask/maintenance/dataset/probesets.py @@ -96,9 +96,22 @@ inbredsetid=1 results = get_normalized_probeset(locus=locus, inbredsetid=inbredsetid) file = open('probesets_%s.txt' % (locus), 'w+') -file.write("GN dataset ID\t\n") +file.write("GN dataset ID\t") +file.write('\n') file.flush() for row in results: - file.write(str(row[0])) + file.write("%s\t" % (row[0])) + file.write("%s\t" % (utilities.clearspaces(row[2], default=''))) + file.write("%s\t" % (utilities.clearspaces(row[3], default=''))) + file.write("%s\t" % (utilities.clearspaces(row[4], default=''))) + file.write("%s\t" % (utilities.clearspaces(row[5], default=''))) + file.write("%s\t" % (utilities.clearspaces(row[6], default=''))) + file.write("%s\t" % (utilities.clearspaces(row[7], default=''))) + file.write("%s\t" % (row[8])) + file.write("%s\t" % (row[9])) + file.write("%s\t" % (row[10])) + file.write("%s\t" % (utilities.clearspaces(row[11], default=''))) + file.write("%s\t" % (row[12])) + file.write('\n') file.flush() file.close() diff --git a/wqflask/maintenance/dataset/utilities.py b/wqflask/maintenance/dataset/utilities.py index 5ffa9047..6033d7b4 100644 --- a/wqflask/maintenance/dataset/utilities.py +++ b/wqflask/maintenance/dataset/utilities.py @@ -10,10 +10,10 @@ def get_cursor(): cursor = con.cursor() return cursor -def clearspaces(s): +def clearspaces(s, default=None): if s: s = re.sub('\s+', ' ', s) s = s.strip() return s else: - return None + return default |