On branch master

1 files changed, 23 insertions, 0 deletions

diff --git a/wqflask/maintenance/dataset/genotypes.py b/wqflask/maintenance/dataset/genotypes.py
index c83fb8b7..164f0ff6 100644
--- a/wqflask/maintenance/dataset/genotypes.py
+++ b/wqflask/maintenance/dataset/genotypes.py
@@ -11,3 +11,26 @@ def get_geno(inbredsetid, name):
         """
     cursor.execute(sql, (inbredsetid, name))
     return cursor.fetchone()
+
+def load_genos(file):
+    genotypes = []
+    file_geno = open(file, 'r')
+    for line in file_geno:
+        line = line.strip()
+        if line.startswith('#'):
+            continue
+        if line.startswith('@'):
+            continue
+        cells = line.split()
+        if line.startswith("Chr"):
+            strains = cells[4:]
+            continue
+        genotype = {}
+        genotype['chr'] = cells[0]
+        genotype['locus'] = cells[1]
+        genotype['cm'] = cells[2]
+        genotype['mb'] = cells[3]
+        genotype['values'] = cells[4:]
+        genotypes.append(genotype)
+    return strains, genotypes
+    
\ No newline at end of file