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authorBonfaceKilz2021-04-30 13:06:58 +0300
committerBonfaceKilz2021-04-30 13:45:15 +0300
commit4e65b73a0f903834f8dbd02d11c49b75d7c935c7 (patch)
tree18add06933583233d183e5554fda91a4a46e8191 /wqflask/maintenance/quantile_normalize.py
parent114e7d3395f28ddead0ff3a94c10d0bf534fb493 (diff)
downloadgenenetwork2-4e65b73a0f903834f8dbd02d11c49b75d7c935c7.tar.gz
autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133
Diffstat (limited to 'wqflask/maintenance/quantile_normalize.py')
-rw-r--r--wqflask/maintenance/quantile_normalize.py16
1 files changed, 8 insertions, 8 deletions
diff --git a/wqflask/maintenance/quantile_normalize.py b/wqflask/maintenance/quantile_normalize.py
index ac7689f5..88bb2cb5 100644
--- a/wqflask/maintenance/quantile_normalize.py
+++ b/wqflask/maintenance/quantile_normalize.py
@@ -21,10 +21,10 @@ def parse_db_uri():
parsed_uri = urllib.parse.urlparse(SQL_URI)
db_conn_info = dict(
- db=parsed_uri.path[1:],
- host=parsed_uri.hostname,
- user=parsed_uri.username,
- passwd=parsed_uri.password)
+ db=parsed_uri.path[1:],
+ host=parsed_uri.hostname,
+ user=parsed_uri.username,
+ passwd=parsed_uri.password)
print(db_conn_info)
return db_conn_info
@@ -70,10 +70,10 @@ def set_data(dataset_name):
trait_name = line1.split('\t')[0]
for i, sample in enumerate(sample_names):
this_sample = {
- "name": sample,
- "value": line1.split('\t')[i + 1],
- "qnorm": line2.split('\t')[i + 1]
- }
+ "name": sample,
+ "value": line1.split('\t')[i + 1],
+ "qnorm": line2.split('\t')[i + 1]
+ }
sample_list.append(this_sample)
query = """SELECT Species.SpeciesName, InbredSet.InbredSetName, ProbeSetFreeze.FullName
FROM Species, InbredSet, ProbeSetFreeze, ProbeFreeze, ProbeSetXRef, ProbeSet