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authorzsloan2017-02-08 18:27:13 +0000
committerzsloan2017-02-08 18:27:13 +0000
commitd015b37f863c69932072d4ecf9fa1c1cd7fd3ee0 (patch)
treecc515905822ac8e8118c614c9a34b07a5f02ddda /wqflask/maintenance/get_group_samplelists.py
parent160503c3c04ca19c9262d5c3b6100b7ac2242e0e (diff)
downloadgenenetwork2-d015b37f863c69932072d4ecf9fa1c1cd7fd3ee0.tar.gz
Changed the way .fam files are written/read, which fixes the issue with GEMMA mapping accuracy.
Diffstat (limited to 'wqflask/maintenance/get_group_samplelists.py')
-rw-r--r--wqflask/maintenance/get_group_samplelists.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py
index 2d48ce78..04e94886 100644
--- a/wqflask/maintenance/get_group_samplelists.py
+++ b/wqflask/maintenance/get_group_samplelists.py
@@ -51,6 +51,6 @@ def get_samplelist_from_plink(genofilename):
samplelist = []
for line in genofile:
line = line.split(" ")
- samplelist.append(line[0])
+ samplelist.append(line[1])
return samplelist