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| author | zsloan | 2021-04-30 18:40:13 +0000 |
|---|---|---|
| committer | zsloan | 2021-04-30 18:40:13 +0000 |
| commit | 21b2e2a552b8b6bedb789263543a4d6d039ac8a9 (patch) | |
| tree | fe55511b99a522198c1b840909d7b91c9b45ab22 /wqflask/maintenance/get_group_samplelists.py | |
| parent | 699b952c7bda5426f3f3e947454f656a4ec7538b (diff) | |
| parent | 799b25481fffc97e2adb07004adf502096bf371c (diff) | |
| download | genenetwork2-21b2e2a552b8b6bedb789263543a4d6d039ac8a9.tar.gz | |
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
Diffstat (limited to 'wqflask/maintenance/get_group_samplelists.py')
| -rw-r--r-- | wqflask/maintenance/get_group_samplelists.py | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py index 3f9d0278..0a450d3f 100644 --- a/wqflask/maintenance/get_group_samplelists.py +++ b/wqflask/maintenance/get_group_samplelists.py @@ -4,12 +4,14 @@ import gzip from base import webqtlConfig + def get_samplelist(file_type, geno_file): if file_type == "geno": return get_samplelist_from_geno(geno_file) elif file_type == "plink": return get_samplelist_from_plink(geno_file) + def get_samplelist_from_geno(genofilename): if os.path.isfile(genofilename + '.gz'): genofilename += '.gz' @@ -33,6 +35,7 @@ def get_samplelist_from_geno(genofilename): samplelist = headers[3:] return samplelist + def get_samplelist_from_plink(genofilename): genofile = open(genofilename) |