diff options
| author | zsloan | 2021-05-06 18:07:19 -0500 |
|---|---|---|
| committer | GitHub | 2021-05-06 18:07:19 -0500 |
| commit | 9ed3c226c561d80957e34294f884fe48373cf6e6 (patch) | |
| tree | 7b3c603b961aa4b840d82ef289887b0a31c0f676 /wqflask/maintenance/get_group_samplelists.py | |
| parent | 2444d60a93ef7c9900ed9a52877bff0ee08fbfb6 (diff) | |
| parent | 3c430082b767a29c3e35cb03e68c1b22373ad353 (diff) | |
| download | genenetwork2-9ed3c226c561d80957e34294f884fe48373cf6e6.tar.gz | |
Merge branch 'testing' into bug/fix_rqtl_covariates
Diffstat (limited to 'wqflask/maintenance/get_group_samplelists.py')
| -rw-r--r-- | wqflask/maintenance/get_group_samplelists.py | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py index 3f9d0278..0a450d3f 100644 --- a/wqflask/maintenance/get_group_samplelists.py +++ b/wqflask/maintenance/get_group_samplelists.py @@ -4,12 +4,14 @@ import gzip from base import webqtlConfig + def get_samplelist(file_type, geno_file): if file_type == "geno": return get_samplelist_from_geno(geno_file) elif file_type == "plink": return get_samplelist_from_plink(geno_file) + def get_samplelist_from_geno(genofilename): if os.path.isfile(genofilename + '.gz'): genofilename += '.gz' @@ -33,6 +35,7 @@ def get_samplelist_from_geno(genofilename): samplelist = headers[3:] return samplelist + def get_samplelist_from_plink(genofilename): genofile = open(genofilename) |