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authorBonfaceKilz2021-04-30 12:26:19 +0300
committerBonfaceKilz2021-04-30 13:45:15 +0300
commit406eb27859cca232a562c722cbbd37aca2e3be84 (patch)
treeba3fba783e33cc56c535b68bd64d757bc6cde608 /wqflask/maintenance/geno_to_json.py
parentc7e661b8ff9f70955418fbc4527378904beb0cf4 (diff)
downloadgenenetwork2-406eb27859cca232a562c722cbbd37aca2e3be84.tar.gz
autopep8: Fix E301,E302,E303,E304,E305,E306
Diffstat (limited to 'wqflask/maintenance/geno_to_json.py')
-rw-r--r--wqflask/maintenance/geno_to_json.py6
1 files changed, 2 insertions, 4 deletions
diff --git a/wqflask/maintenance/geno_to_json.py b/wqflask/maintenance/geno_to_json.py
index fa0dcebd..ad3f2b72 100644
--- a/wqflask/maintenance/geno_to_json.py
+++ b/wqflask/maintenance/geno_to_json.py
@@ -25,10 +25,10 @@ from pprint import pformat as pf
 
 #from utility.tools import flat_files
 
+
 class EmptyConfigurations(Exception): pass
 
         
-
 class Marker:
     def __init__(self):
         self.name = None
@@ -37,6 +37,7 @@ class Marker:
         self.Mb = None
         self.genotypes = []
 
+
 class ConvertGenoFile:
 
     def __init__(self, input_file, output_file):
@@ -78,7 +79,6 @@ class ConvertGenoFile:
             # elif self.file_type == "snps":
             #    self.process_snps_file()
 
-
     def process_csv(self):
         for row_count, row in enumerate(self.process_rows()):
             row_items = row.split("\t")
@@ -121,7 +121,6 @@ class ConvertGenoFile:
                     
             # self.output_fh.write("\n")
 
-
     def process_rows(self):
         for self.latest_row_pos, row in enumerate(self.input_fh):
             # if self.input_file.endswith(".geno.gz"):
@@ -182,7 +181,6 @@ class ConvertGenoFile:
     #    convertob = ConvertGenoFile(input_file, output_file)
         
 
-
 if __name__ == "__main__":
     Old_Geno_Directory = """/export/local/home/zas1024/gn2-zach/genotype_files/genotype"""
     New_Geno_Directory = """/export/local/home/zas1024/gn2-zach/genotype_files/genotype/json"""