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| author | Pjotr Prins | 2020-04-26 12:32:46 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2020-04-26 12:32:46 -0500 |
| commit | 14d49450c47e8ef3b34bca9e759acd371319a854 (patch) | |
| tree | 3f45b7455ec114ebdd9fdd2f2c4a92c9eb3cf756 /wqflask/maintenance/geno_to_json.py | |
| parent | 33e2e09d00881de9b07274bc52b58587e5135cab (diff) | |
| parent | 15d8e24da26cf6d42d1bdb8a9a189b9ec061d147 (diff) | |
| download | genenetwork2-14d49450c47e8ef3b34bca9e759acd371319a854.tar.gz | |
Merge master and testing master
Diffstat (limited to 'wqflask/maintenance/geno_to_json.py')
| -rw-r--r-- | wqflask/maintenance/geno_to_json.py | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/wqflask/maintenance/geno_to_json.py b/wqflask/maintenance/geno_to_json.py index 789a1691..9579812a 100644 --- a/wqflask/maintenance/geno_to_json.py +++ b/wqflask/maintenance/geno_to_json.py @@ -24,6 +24,8 @@ import simplejson as json from pprint import pformat as pf +#from utility.tools import flat_files + class EmptyConfigurations(Exception): pass @@ -183,8 +185,8 @@ class ConvertGenoFile(object): if __name__=="__main__": - Old_Geno_Directory = """/home/zas1024/genotype_files/genotype/""" - New_Geno_Directory = """/home/zas1024/genotype_files/genotype/json/""" + Old_Geno_Directory = """/export/local/home/zas1024/gn2-zach/genotype_files/genotype""" + New_Geno_Directory = """/export/local/home/zas1024/gn2-zach/genotype_files/genotype/json""" #Input_File = """/home/zas1024/gene/genotype_files/genotypes/BXD.geno""" #Output_File = """/home/zas1024/gene/wqflask/wqflask/pylmm/data/bxd.snps""" #convertob = ConvertGenoFile("/home/zas1024/gene/genotype_files/genotypes/SRxSHRSPF2.geno", "/home/zas1024/gene/genotype_files/new_genotypes/SRxSHRSPF2.json") |