diff options
| author | BonfaceKilz | 2021-04-30 12:52:55 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2021-04-30 13:45:15 +0300 |
| commit | bd702e59d7a426fe351d34367bf824683c655696 (patch) | |
| tree | 95994298c5dc29e527a0646cd99a248c7bbd8a66 /wqflask/maintenance/generate_kinship_from_bimbam.py | |
| parent | d1bc52a0d8e1219f377e804c3f27a3543d234fcb (diff) | |
| download | genenetwork2-bd702e59d7a426fe351d34367bf824683c655696.tar.gz | |
autopep8: Fix W291, W292, W293, W391
Diffstat (limited to 'wqflask/maintenance/generate_kinship_from_bimbam.py')
| -rw-r--r-- | wqflask/maintenance/generate_kinship_from_bimbam.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/wqflask/maintenance/generate_kinship_from_bimbam.py b/wqflask/maintenance/generate_kinship_from_bimbam.py index bed634fa..cd39fceb 100644 --- a/wqflask/maintenance/generate_kinship_from_bimbam.py +++ b/wqflask/maintenance/generate_kinship_from_bimbam.py @@ -19,7 +19,7 @@ class GenerateKinshipMatrices: self.group_name = group_name self.geno_file = geno_file self.pheno_file = pheno_file - + def generate_kinship(self): gemma_command = "/gnu/store/xhzgjr0jvakxv6h3blj8z496xjig69b0-profile/bin/gemma -g " + self.geno_file + \ " -p " + self.pheno_file + \ @@ -56,11 +56,11 @@ class GenerateKinshipMatrices: print(" Column is:", convertob.latest_col_value) print(" Row is:", convertob.latest_row_value) break - - + + if __name__ == "__main__": Geno_Directory = """/export/local/home/zas1024/genotype_files/genotype/""" Bimbam_Directory = """/export/local/home/zas1024/genotype_files/genotype/bimbam/""" GenerateKinshipMatrices.process_all(Geno_Directory, Bimbam_Directory) - + # ./gemma -g /home/zas1024/genotype_files/genotype/bimbam/BXD_geno.txt -p /home/zas1024/genotype_files/genotype/bimbam/BXD_pheno.txt -gk 1 -o BXD |