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authorzsloan2018-10-01 16:09:47 +0000
committerzsloan2018-10-01 16:09:47 +0000
commita3365dae23f204e489939d3defc55edc1b4872d8 (patch)
treed4b06818cd0af291cfa34a484e25a6c07621f1ea /wqflask/maintenance/generate_kinship_from_bimbam.py
parentee8e1eacd88399609f530a33e2d91cf7895da5b0 (diff)
downloadgenenetwork2-a3365dae23f204e489939d3defc55edc1b4872d8.tar.gz
- Can now remove cofactors from correlation scatterplot and select them by just clicking their row in collection
- Cofactor color picker now works in Safari/Macs - Displays N for relevant samples in trait page sample table - Don't show bar chart when N>256 - Mapping loading page contents better centered - Anonymous collections timeout correctly listed as 30 days now - Minor allele frequency can actually be changed for GEMMA now (previously didn't work) - Fixed transcript position marker location for mapping results - Notifies user if their e-mail isn't associated with an account when they attempt to request forgotten password - Users can now map with submitted traits - Histogram width changes depending upon number of bins (need to improve this still) - Improved Q-q plot (previously called "probability plot")
Diffstat (limited to 'wqflask/maintenance/generate_kinship_from_bimbam.py')
-rw-r--r--wqflask/maintenance/generate_kinship_from_bimbam.py2
1 files changed, 2 insertions, 0 deletions
diff --git a/wqflask/maintenance/generate_kinship_from_bimbam.py b/wqflask/maintenance/generate_kinship_from_bimbam.py
index f322341d..ad0eb036 100644
--- a/wqflask/maintenance/generate_kinship_from_bimbam.py
+++ b/wqflask/maintenance/generate_kinship_from_bimbam.py
@@ -32,6 +32,8 @@ class GenerateKinshipMatrices(object):
if not input_file.endswith(('geno', '.geno.gz')):
continue
group_name = ".".join(input_file.split('.')[:-1])
+ if group_name == "HSNIH-Palmer":
+ continue
geno_input_file = os.path.join(bimbam_dir, group_name + "_geno.txt")
pheno_input_file = os.path.join(bimbam_dir, group_name + "_pheno.txt")
convertob = GenerateKinshipMatrices(group_name, geno_input_file, pheno_input_file)