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author | zsloan | 2018-10-01 16:09:47 +0000 |
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committer | zsloan | 2018-10-01 16:09:47 +0000 |
commit | a3365dae23f204e489939d3defc55edc1b4872d8 (patch) | |
tree | d4b06818cd0af291cfa34a484e25a6c07621f1ea /wqflask/maintenance/generate_kinship_from_bimbam.py | |
parent | ee8e1eacd88399609f530a33e2d91cf7895da5b0 (diff) | |
download | genenetwork2-a3365dae23f204e489939d3defc55edc1b4872d8.tar.gz |
- Can now remove cofactors from correlation scatterplot and select them by just clicking their row in collection
- Cofactor color picker now works in Safari/Macs
- Displays N for relevant samples in trait page sample table
- Don't show bar chart when N>256
- Mapping loading page contents better centered
- Anonymous collections timeout correctly listed as 30 days now
- Minor allele frequency can actually be changed for GEMMA now (previously didn't work)
- Fixed transcript position marker location for mapping results
- Notifies user if their e-mail isn't associated with an account when they attempt to request forgotten password
- Users can now map with submitted traits
- Histogram width changes depending upon number of bins (need to improve this still)
- Improved Q-q plot (previously called "probability plot")
Diffstat (limited to 'wqflask/maintenance/generate_kinship_from_bimbam.py')
-rw-r--r-- | wqflask/maintenance/generate_kinship_from_bimbam.py | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/wqflask/maintenance/generate_kinship_from_bimbam.py b/wqflask/maintenance/generate_kinship_from_bimbam.py index f322341d..ad0eb036 100644 --- a/wqflask/maintenance/generate_kinship_from_bimbam.py +++ b/wqflask/maintenance/generate_kinship_from_bimbam.py @@ -32,6 +32,8 @@ class GenerateKinshipMatrices(object): if not input_file.endswith(('geno', '.geno.gz')): continue group_name = ".".join(input_file.split('.')[:-1]) + if group_name == "HSNIH-Palmer": + continue geno_input_file = os.path.join(bimbam_dir, group_name + "_geno.txt") pheno_input_file = os.path.join(bimbam_dir, group_name + "_pheno.txt") convertob = GenerateKinshipMatrices(group_name, geno_input_file, pheno_input_file) |