about summary refs log tree commit diff
path: root/wqflask/maintenance/generate_kinship_from_bimbam.py
diff options
context:
space:
mode:
authorBonfaceKilz2021-04-30 13:06:58 +0300
committerBonfaceKilz2021-04-30 13:45:15 +0300
commit4e65b73a0f903834f8dbd02d11c49b75d7c935c7 (patch)
tree18add06933583233d183e5554fda91a4a46e8191 /wqflask/maintenance/generate_kinship_from_bimbam.py
parent114e7d3395f28ddead0ff3a94c10d0bf534fb493 (diff)
downloadgenenetwork2-4e65b73a0f903834f8dbd02d11c49b75d7c935c7.tar.gz
autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133
Diffstat (limited to 'wqflask/maintenance/generate_kinship_from_bimbam.py')
-rw-r--r--wqflask/maintenance/generate_kinship_from_bimbam.py4
1 files changed, 2 insertions, 2 deletions
diff --git a/wqflask/maintenance/generate_kinship_from_bimbam.py b/wqflask/maintenance/generate_kinship_from_bimbam.py
index cd39fceb..9f01d094 100644
--- a/wqflask/maintenance/generate_kinship_from_bimbam.py
+++ b/wqflask/maintenance/generate_kinship_from_bimbam.py
@@ -23,7 +23,7 @@ class GenerateKinshipMatrices:
     def generate_kinship(self):
         gemma_command = "/gnu/store/xhzgjr0jvakxv6h3blj8z496xjig69b0-profile/bin/gemma -g " + self.geno_file + \
             " -p " + self.pheno_file + \
-                " -gk 1 -outdir /home/zas1024/genotype_files/genotype/bimbam/ -o " + self.group_name
+            " -gk 1 -outdir /home/zas1024/genotype_files/genotype/bimbam/ -o " + self.group_name
         print("command:", gemma_command)
         os.system(gemma_command)
 
@@ -52,7 +52,7 @@ class GenerateKinshipMatrices:
                 print("  Exception:", why)
                 print(traceback.print_exc())
                 print("    Found in row %s at tabular column %s" % (convertob.latest_row_pos,
-                                                                convertob.latest_col_pos))
+                                                                    convertob.latest_col_pos))
                 print("    Column is:", convertob.latest_col_value)
                 print("    Row is:", convertob.latest_row_value)
                 break