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author | Lei Yan | 2014-02-22 22:13:26 -0600 |
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committer | Lei Yan | 2014-02-22 22:13:26 -0600 |
commit | af92bb48b2589d2804569863bc0306f787df1c60 (patch) | |
tree | 594ad9481cc6ffabfb8e687efc646d94e9328aa6 /wqflask/maintenance/dataset | |
parent | 562e7ba9b6b5a051da1a9f0a046f39f480998be8 (diff) | |
download | genenetwork2-af92bb48b2589d2804569863bc0306f787df1c60.tar.gz |
On branch master
Diffstat (limited to 'wqflask/maintenance/dataset')
-rw-r--r-- | wqflask/maintenance/dataset/datastructure.py | 14 | ||||
-rw-r--r-- | wqflask/maintenance/dataset/load_genotypes.py | 11 |
2 files changed, 14 insertions, 11 deletions
diff --git a/wqflask/maintenance/dataset/datastructure.py b/wqflask/maintenance/dataset/datastructure.py index 0ee4b4ab..e1d88df2 100644 --- a/wqflask/maintenance/dataset/datastructure.py +++ b/wqflask/maintenance/dataset/datastructure.py @@ -66,6 +66,20 @@ def get_genofreeze_byinbredsetid(inbredsetid): cursor.execute(sql, (inbredsetid)) return cursor.fetchone() +def get_nextdataid_genotype(): + cursor, con = utilities.get_cursor() + sql = """ + SELECT GenoData.`Id` + FROM GenoData + ORDER BY GenoData.`Id` DESC + LIMIT 1 + """ + cursor.execute(sql) + re = cursor.fetchone() + dataid = re[0] + dataid += 1 + return dataid + def get_nextdataid_phenotype(): cursor, con = utilities.get_cursor() sql = """ diff --git a/wqflask/maintenance/dataset/load_genotypes.py b/wqflask/maintenance/dataset/load_genotypes.py index 124d3776..0e35fc24 100644 --- a/wqflask/maintenance/dataset/load_genotypes.py +++ b/wqflask/maintenance/dataset/load_genotypes.py @@ -55,17 +55,6 @@ def main(argv): print values return - # open db - host = 'localhost' - user = 'webqtl' - passwd = 'webqtl' - db = 'db_webqtl' - con = MySQLdb.Connect(db=db, user=user, passwd=passwd, host=host) - cursor = con.cursor() - # var - speciesid = int(argv[2]) - inbredsetid = int(argv[3]) - genofreezeid = int(argv[4]) sql = """ SELECT Id FROM GenoData |