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authorLei Yan2014-01-31 16:57:30 -0600
committerLei Yan2014-01-31 16:57:30 -0600
commitc1bd0f562b5249b9a6911e3873dad8dd853aaab7 (patch)
treebd79e5b527a9a584d1f2aab6c7fb901a26d26dd9 /wqflask/maintenance/dataset/probesets
parentd6543befcdaf4786f42c10c1cdd0cb473a8d8453 (diff)
downloadgenenetwork2-c1bd0f562b5249b9a6911e3873dad8dd853aaab7.tar.gz
On branch master
Diffstat (limited to 'wqflask/maintenance/dataset/probesets')
-rw-r--r--wqflask/maintenance/dataset/probesets/probesets.py45
1 files changed, 45 insertions, 0 deletions
diff --git a/wqflask/maintenance/dataset/probesets/probesets.py b/wqflask/maintenance/dataset/probesets/probesets.py
new file mode 100644
index 00000000..7fa65786
--- /dev/null
+++ b/wqflask/maintenance/dataset/probesets/probesets.py
@@ -0,0 +1,45 @@
+import sys
+sys.path.append('.')
+sys.path.append('..')
+
+from utilities import db
+
+def fetch_probesetxref(probesetfreezeid):
+    cursor = db.get_cursor()
+    sql = """
+        SELECT ProbeSetXRef.`ProbeSetId`, ProbeSetXRef.`DataId`
+        FROM ProbeSetXRef
+        WHERE ProbeSetXRef.`ProbeSetFreezeId`=%s
+        """
+    cursor.execute(sql, (probesetfreezeid))
+    return cursor.fetchall()
+    
+def fetch_probeset(probesetid):
+    cursor = db.get_cursor()
+    sql = """
+        SELECT *
+        FROM ProbeSet
+        WHERE ProbeSet.`Id`=%s
+        """
+    cursor.execute(sql, (probesetid))
+    return cursor.fetchone()
+    
+def fetch_probesetdata(probesetdataid):
+    cursor = db.get_cursor()
+    sql = """
+        SELECT Strain.`Id`, Strain.`Name`, ProbeSetData.`value`
+        FROM ProbeSetData, Strain
+        WHERE ProbeSetData.`Id`=%s
+        AND ProbeSetData.`StrainId`=Strain.`Id`;
+        """
+    cursor.execute(sql, (probesetdataid))
+    return cursor.fetchall()
+
+results = fetch_probesetxref(112)
+for row in results:
+    print row
+    probesetid = row[0]
+    probesetdataid = row[1]
+    print fetch_probeset(probesetid)
+    print fetch_probesetdata(probesetdataid)
+    break
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