aboutsummaryrefslogtreecommitdiff
path: root/wqflask/maintenance/dataset/probesets.py
diff options
context:
space:
mode:
authorLei Yan2014-02-04 11:00:38 -0600
committerLei Yan2014-02-04 11:00:38 -0600
commit2c6abd47b78bea42423aa45f417897525f63f8a2 (patch)
tree65b62439685bdecae2ef99d14757a51e021b7147 /wqflask/maintenance/dataset/probesets.py
parent91491d2f9918603f8270026b2b7a14d53d5f9037 (diff)
downloadgenenetwork2-2c6abd47b78bea42423aa45f417897525f63f8a2.tar.gz
On branch master
Diffstat (limited to 'wqflask/maintenance/dataset/probesets.py')
-rw-r--r--wqflask/maintenance/dataset/probesets.py15
1 files changed, 13 insertions, 2 deletions
diff --git a/wqflask/maintenance/dataset/probesets.py b/wqflask/maintenance/dataset/probesets.py
index fbe54108..2c755203 100644
--- a/wqflask/maintenance/dataset/probesets.py
+++ b/wqflask/maintenance/dataset/probesets.py
@@ -15,7 +15,7 @@ def get_probesetxref(probesetfreezeid):
def get_probeset(probesetid):
cursor = utilities.get_cursor()
sql = """
- SELECT *
+ SELECT ProbeSet.`Id`, ProbeSet.`Name`, ProbeSet.`Symbol`, ProbeSet.`description`, ProbeSet.`Probe_Target_Description`, ProbeSet.`Chr`, ProbeSet.`Mb`
FROM ProbeSet
WHERE ProbeSet.`Id`=%s
"""
@@ -57,4 +57,15 @@ def get_probesetxref_inbredsetid(locus, inbredsetid):
cursor.execute(sql, (inbredsetid, locus))
return cursor.fetchall()
-print get_probesetxref_inbredsetid(locus="rs3663871", inbredsetid=1) \ No newline at end of file
+def get_normalized_probeset(locus, inbredsetid):
+ normalized_probesets = []
+ probesetxrefs = get_probesetxref_inbredsetid(locus, inbredsetid)
+ for probesetxref in probesetxrefs:
+ normalized_probeset = []
+ probesetid = probesetxref[0]
+ probeset = get_probeset(probesetid)
+ normalized_probeset.append(probeset)
+ normalized_probesets.append(normalized_probeset)
+ print normalized_probesets
+
+get_normalized_probeset(locus="rs3663871", inbredsetid=1)