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| author | Zachary Sloan | 2014-07-21 16:07:42 +0000 |
|---|---|---|
| committer | Zachary Sloan | 2014-07-21 16:07:42 +0000 |
| commit | d952a23662eb4c46041be3945b5c3ccacf5506b6 (patch) | |
| tree | 00750c5c88fb7dc6f300a148ea40f95a7b46be3a /wqflask/maintenance/dataset/datasampledir | |
| parent | 818de422631392c246646b52a5b227d23153e667 (diff) | |
| parent | c424db452c243c6f0f64ee58d2d7baeb147dd3c8 (diff) | |
| download | genenetwork2-d952a23662eb4c46041be3945b5c3ccacf5506b6.tar.gz | |
Merge /home/lei/gene
Diffstat (limited to 'wqflask/maintenance/dataset/datasampledir')
5 files changed, 37 insertions, 0 deletions
diff --git a/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini b/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini new file mode 100644 index 00000000..abff371b --- /dev/null +++ b/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini @@ -0,0 +1,7 @@ +[config] +inbredsetid = 1 +genofile = datasampledir/load_genotypes/sample.geno +genovalue_U = x +genovalue_H = 0 +genovalue_B = -1 +genovalue_D = 1 diff --git a/wqflask/maintenance/dataset/datasampledir/load_genotypes/sample.geno b/wqflask/maintenance/dataset/datasampledir/load_genotypes/sample.geno new file mode 100644 index 00000000..0024ffd1 --- /dev/null +++ b/wqflask/maintenance/dataset/datasampledir/load_genotypes/sample.geno @@ -0,0 +1,12 @@ +@name:BXD +@type:riset +@mat:B +@pat:D +@het:H +@unk:U +Chr Locus cM Mb BXD1 BXD2 BXD5 BXD6 BXD8 +1 rs6269442 0 3.482275 D B D D D +2 rs6365999 0.3 4.811062 B B D D D +3 rs6376963 0.895 5.008089 B B D D D +4 rs3677817 1.185 5.176058 B B D D D +5 rs8236463 2.081 5.579193 B B D D D diff --git a/wqflask/maintenance/dataset/datasampledir/load_phenotypes/config.ini b/wqflask/maintenance/dataset/datasampledir/load_phenotypes/config.ini new file mode 100644 index 00000000..638c3bd8 --- /dev/null +++ b/wqflask/maintenance/dataset/datasampledir/load_phenotypes/config.ini @@ -0,0 +1,4 @@ +[config] +inbredsetid = 1 +datafile = datasampledir/load_phenotypes/sample_data.txt +metafile = datasampledir/load_phenotypes/sample_meta.txt diff --git a/wqflask/maintenance/dataset/datasampledir/load_phenotypes/sample_data.txt b/wqflask/maintenance/dataset/datasampledir/load_phenotypes/sample_data.txt new file mode 100644 index 00000000..a39fd3be --- /dev/null +++ b/wqflask/maintenance/dataset/datasampledir/load_phenotypes/sample_data.txt @@ -0,0 +1,10 @@ +CaseID BXD1 BXD2 BXD3 BXD4 BXD5 +Value 1 2 3 4 5 +SE 6 7 8 9 10 +N 11 12 13 14 15 +Sex 16 17 18 19 20 +SE 21 22 23 24 25 +N 26 27 28 29 30 +Age 31 32 33 34 35 +SE 36 37 38 39 40 +N 41 42 43 44 45 diff --git a/wqflask/maintenance/dataset/datasampledir/load_phenotypes/sample_meta.txt b/wqflask/maintenance/dataset/datasampledir/load_phenotypes/sample_meta.txt new file mode 100644 index 00000000..5172223f --- /dev/null +++ b/wqflask/maintenance/dataset/datasampledir/load_phenotypes/sample_meta.txt @@ -0,0 +1,4 @@ +Pubmed ID Pre Publication Description Post Publication Description Original Description Pre Publication Abbreviation Post Publication Abbreviation Lab Code Submitter Owner Authorized Users Authors Title Abstract Journal Volume Pages Month Year Units +x Pre Publication Description 1 Post Publication Description 1 Original Description 1 Pre Publication Abbreviation 1 Post Publication Abbreviation 1 Lab Code 1 Submitter 1 Owner 1 Authorized Users 1 Authors 1 Title 1 Abstract 1 Journal 1 Volume 1 Pages 1 Month 1 2001 unit 1 +x Pre Publication Description 2 Post Publication Description 2 Original Description 2 Pre Publication Abbreviation 2 Post Publication Abbreviation 2 Lab Code 2 Submitter 2 Owner 2 Authorized Users 2 Authors 2 Title 2 Abstract 2 Journal 2 Volume 2 Pages 2 Month 2 2002 unit 2 +19958391 Pre Publication Description 3 Post Publication Description 3 Original Description 3 Pre Publication Abbreviation 3 Post Publication Abbreviation 3 Lab Code 3 Submitter 3 Owner 3 Authorized Users 3 Authors 3 Title 3 Abstract 3 Journal 3 Volume 3 Pages 3 Month 3 2003 unit 3 |