Merge /home/zas1024/gene

1 files changed, 0 insertions, 47 deletions

diff --git a/wqflask/maintenance/dataset/correlations.py b/wqflask/maintenance/dataset/correlations.py
deleted file mode 100644
index b089e446..00000000
--- a/wqflask/maintenance/dataset/correlations.py
+++ /dev/null
@@ -1,47 +0,0 @@
-# Author:               Lei Yan
-# Create Date:          2014-01-21
-# Last Update Date:     2014-01-24
-
-# import
-import sys
-import os
-import re
-import MySQLdb
-import ConfigParser
-
-def main(argv):
-
-    # load configuration from configuration file
-    config = ConfigParser.ConfigParser()
-    config.read(argv[1])
-    genofile = config.get('configuration', 'genofile')
-
-    # parse genofile
-    genotypes = []
-    file_geno = open(genofile, 'r')
-    for line in file_geno:
-        line = line.strip()
-        if line.startswith('#'):
-            continue
-        if line.startswith('@'):
-            continue
-        cells = line.split()
-        if line.startswith("Chr"):
-            strains = cells[4:]
-            continue
-        genotype = {}
-        genotype['chr'] = cells[0]
-        genotype['locus'] = cells[1]
-        genotype['cm'] = cells[2]
-        genotype['mb'] = cells[3]
-        genotype['values'] = cells[4:]
-        genotypes.append(genotype)
-    print "get %d strains:\t%s" % (len(strains), strains)
-    print "load %d genotypes" % len(genotypes)
-
-    # phenotypes
-
-# main
-if __name__ == "__main__":
-    main(sys.argv)
-    print "exit successfully"