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| author | zsloan | 2018-12-21 10:48:33 -0600 |
|---|---|---|
| committer | zsloan | 2018-12-21 10:48:33 -0600 |
| commit | ee1e49b90663be72032c8dee32748e97bc28e1e9 (patch) | |
| tree | dd587941f52d7cdb293d6509f00b76102008146a /wqflask/maintenance/convert_geno_to_bimbam.py | |
| parent | 1671f4c7d4525f92640a8ce2c91c54b921da5f1f (diff) | |
| download | genenetwork2-ee1e49b90663be72032c8dee32748e97bc28e1e9.tar.gz | |
Fixed collections so they can be very large (1000+ traits)
Added option to submit traits in collection to BNW
Fixed issue with "x" values for user-submitted traits
Fixed issue where post-publications descriptions were wrongly appearing in global search results
Diffstat (limited to 'wqflask/maintenance/convert_geno_to_bimbam.py')
| -rw-r--r-- | wqflask/maintenance/convert_geno_to_bimbam.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/wqflask/maintenance/convert_geno_to_bimbam.py b/wqflask/maintenance/convert_geno_to_bimbam.py index 8f331a06..528b98cf 100644 --- a/wqflask/maintenance/convert_geno_to_bimbam.py +++ b/wqflask/maintenance/convert_geno_to_bimbam.py @@ -180,8 +180,8 @@ class ConvertGenoFile(object): break if __name__=="__main__": - Old_Geno_Directory = """/home/zas1024/genotype_files/genotype/""" - New_Geno_Directory = """/home/zas1024/genotype_files/genotype/bimbam/""" + Old_Geno_Directory = """/export/local/home/zas1024/gn2-zach/genotype_files/genotype""" + New_Geno_Directory = """/export/local/home/zas1024/gn2-zach/genotype_files/genotype/bimbam""" #Input_File = """/home/zas1024/gene/genotype_files/genotypes/BXD.geno""" #Output_File = """/home/zas1024/gene/wqflask/wqflask/pylmm/data/bxd.snps""" #convertob = ConvertGenoFile("/home/zas1024/gene/genotype_files/genotypes/SRxSHRSPF2.geno", "/home/zas1024/gene/genotype_files/new_genotypes/SRxSHRSPF2.json") |