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| author | BonfaceKilz | 2021-04-30 12:26:19 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2021-04-30 13:45:15 +0300 |
| commit | 406eb27859cca232a562c722cbbd37aca2e3be84 (patch) | |
| tree | ba3fba783e33cc56c535b68bd64d757bc6cde608 /wqflask/maintenance/convert_dryad_to_bimbam.py | |
| parent | c7e661b8ff9f70955418fbc4527378904beb0cf4 (diff) | |
| download | genenetwork2-406eb27859cca232a562c722cbbd37aca2e3be84.tar.gz | |
autopep8: Fix E301,E302,E303,E304,E305,E306
Diffstat (limited to 'wqflask/maintenance/convert_dryad_to_bimbam.py')
| -rw-r--r-- | wqflask/maintenance/convert_dryad_to_bimbam.py | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/wqflask/maintenance/convert_dryad_to_bimbam.py b/wqflask/maintenance/convert_dryad_to_bimbam.py index 8eab66e8..e417c280 100644 --- a/wqflask/maintenance/convert_dryad_to_bimbam.py +++ b/wqflask/maintenance/convert_dryad_to_bimbam.py @@ -55,15 +55,18 @@ def read_dryad_file(filename): # # return geno_rows + def write_bimbam_files(geno_rows): with open('/home/zas1024/cfw_data/CFW_geno.txt', 'w') as geno_fh: for row in geno_rows: geno_fh.write(", ".join(row) + "\n") + def convert_dryad_to_bimbam(filename): geno_file_rows = read_dryad_file(filename) write_bimbam_files(geno_file_rows) + if __name__ == "__main__": input_filename = "/home/zas1024/cfw_data/" + sys.argv[1] + ".txt" convert_dryad_to_bimbam(input_filename) |