Merge git://github.com/zsloan/genenetwork into flask

1 files changed, 381 insertions, 0 deletions

diff --git a/wqflask/flask_security/core.py b/wqflask/flask_security/core.py
new file mode 100644
index 00000000..d794fad5
--- /dev/null
+++ b/wqflask/flask_security/core.py
@@ -0,0 +1,381 @@
+# -*- coding: utf-8 -*-
+"""
+    flask.ext.security.core
+    ~~~~~~~~~~~~~~~~~~~~~~~
+
+    Flask-Security core module
+
+    :copyright: (c) 2012 by Matt Wright.
+    :license: MIT, see LICENSE for more details.
+"""
+
+from flask import current_app
+from flask.ext.login import AnonymousUser as AnonymousUserBase, \
+     UserMixin as BaseUserMixin, LoginManager, current_user
+from flask.ext.principal import Principal, RoleNeed, UserNeed, Identity, \
+     identity_loaded
+from itsdangerous import URLSafeTimedSerializer
+from passlib.context import CryptContext
+from werkzeug.datastructures import ImmutableList
+from werkzeug.local import LocalProxy
+
+from .utils import config_value as cv, get_config, md5, url_for_security
+from .views import create_blueprint
+from .forms import LoginForm, ConfirmRegisterForm, RegisterForm, \
+     ForgotPasswordForm, ChangePasswordForm, ResetPasswordForm, \
+     SendConfirmationForm, PasswordlessLoginForm
+
+# Convenient references
+_security = LocalProxy(lambda: current_app.extensions['security'])
+
+
+#: Default Flask-Security configuration
+_default_config = {
+    'BLUEPRINT_NAME': 'security',
+    'URL_PREFIX': None,
+    'SUBDOMAIN': None,
+    'FLASH_MESSAGES': True,
+    'PASSWORD_HASH': 'plaintext',
+    'PASSWORD_SALT': None,
+    'LOGIN_URL': '/login',
+    'LOGOUT_URL': '/logout',
+    'REGISTER_URL': '/register',
+    'RESET_URL': '/reset',
+    'CHANGE_URL': '/change',
+    'CONFIRM_URL': '/confirm',
+    'POST_LOGIN_VIEW': '/',
+    'POST_LOGOUT_VIEW': '/',
+    'CONFIRM_ERROR_VIEW': None,
+    'POST_REGISTER_VIEW': None,
+    'POST_CONFIRM_VIEW': None,
+    'POST_RESET_VIEW': None,
+    'POST_CHANGE_VIEW': None,
+    'UNAUTHORIZED_VIEW': None,
+    'FORGOT_PASSWORD_TEMPLATE': 'security/forgot_password.html',
+    'LOGIN_USER_TEMPLATE': 'security/login_user.html',
+    'REGISTER_USER_TEMPLATE': 'security/register_user.html',
+    'RESET_PASSWORD_TEMPLATE': 'security/reset_password.html',
+    'SEND_CONFIRMATION_TEMPLATE': 'security/send_confirmation.html',
+    'SEND_LOGIN_TEMPLATE': 'security/send_login.html',
+    'CONFIRMABLE': False,
+    'REGISTERABLE': False,
+    'RECOVERABLE': False,
+    'TRACKABLE': False,
+    'PASSWORDLESS': False,
+    'CHANGEABLE': False,
+    'SEND_REGISTER_EMAIL': True,
+    'LOGIN_WITHIN': '1 days',
+    'CONFIRM_EMAIL_WITHIN': '5 days',
+    'RESET_PASSWORD_WITHIN': '5 days',
+    'LOGIN_WITHOUT_CONFIRMATION': False,
+    'EMAIL_SENDER': 'no-reply@localhost',
+    'TOKEN_AUTHENTICATION_KEY': 'auth_token',
+    'TOKEN_AUTHENTICATION_HEADER': 'Authentication-Token',
+    'CONFIRM_SALT': 'confirm-salt',
+    'RESET_SALT': 'reset-salt',
+    'LOGIN_SALT': 'login-salt',
+    'CHANGE_SALT': 'change-salt',
+    'REMEMBER_SALT': 'remember-salt',
+    'DEFAULT_HTTP_AUTH_REALM': 'Login Required',
+    'EMAIL_SUBJECT_REGISTER': 'Welcome',
+    'EMAIL_SUBJECT_CONFIRM': 'Please confirm your email',
+    'EMAIL_SUBJECT_PASSWORDLESS': 'Login instructions',
+    'EMAIL_SUBJECT_PASSWORD_NOTICE': 'Your password has been reset',
+    'EMAIL_SUBJECT_PASSWORD_CHANGE_NOTICE': 'Your password has been changed',
+    'EMAIL_SUBJECT_PASSWORD_RESET': 'Password reset instructions'
+}
+
+#: Default Flask-Security messages
+_default_messages = {
+    'UNAUTHORIZED': ('You do not have permission to view this resource.', 'error'),
+    'CONFIRM_REGISTRATION': ('Thank you. Confirmation instructions have been sent to %(email)s.', 'success'),
+    'EMAIL_CONFIRMED': ('Thank you. Your email has been confirmed.', 'success'),
+    'ALREADY_CONFIRMED': ('Your email has already been confirmed.', 'info'),
+    'INVALID_CONFIRMATION_TOKEN': ('Invalid confirmation token.', 'error'),
+    'EMAIL_ALREADY_ASSOCIATED': ('%(email)s is already associated with an account.', 'error'),
+    'PASSWORD_MISMATCH': ('Password does not match', 'error'),
+    'RETYPE_PASSWORD_MISMATCH': ('Passwords do not match', 'error'),
+    'INVALID_REDIRECT': ('Redirections outside the domain are forbidden', 'error'),
+    'PASSWORD_RESET_REQUEST': ('Instructions to reset your password have been sent to %(email)s.', 'info'),
+    'PASSWORD_RESET_EXPIRED': ('You did not reset your password within %(within)s. New instructions have been sent to %(email)s.', 'error'),
+    'INVALID_RESET_PASSWORD_TOKEN': ('Invalid reset password token.', 'error'),
+    'CONFIRMATION_REQUIRED': ('Email requires confirmation.', 'error'),
+    'CONFIRMATION_REQUEST': ('Confirmation instructions have been sent to %(email)s.', 'info'),
+    'CONFIRMATION_EXPIRED': ('You did not confirm your email within %(within)s. New instructions to confirm your email have been sent to %(email)s.', 'error'),
+    'LOGIN_EXPIRED': ('You did not login within %(within)s. New instructions to login have been sent to %(email)s.', 'error'),
+    'LOGIN_EMAIL_SENT': ('Instructions to login have been sent to %(email)s.', 'success'),
+    'INVALID_LOGIN_TOKEN': ('Invalid login token.', 'error'),
+    'DISABLED_ACCOUNT': ('Account is disabled.', 'error'),
+    'EMAIL_NOT_PROVIDED': ('Email not provided', 'error'),
+    'INVALID_EMAIL_ADDRESS': ('Invalid email address', 'error'),
+    'PASSWORD_NOT_PROVIDED': ('Password not provided', 'error'),
+    'USER_DOES_NOT_EXIST': ('Specified user does not exist', 'error'),
+    'INVALID_PASSWORD': ('Invalid password', 'error'),
+    'PASSWORDLESS_LOGIN_SUCCESSFUL': ('You have successfuly logged in.', 'success'),
+    'PASSWORD_RESET': ('You successfully reset your password and you have been logged in automatically.', 'success'),
+    'PASSWORD_CHANGE': ('You successfully changed your password.', 'success'),
+    'LOGIN': ('Please log in to access this page.', 'info'),
+    'REFRESH': ('Please reauthenticate to access this page.', 'info'),
+}
+
+_allowed_password_hash_schemes = [
+    'bcrypt',
+    'des_crypt',
+    'pbkdf2_sha256',
+    'pbkdf2_sha512',
+    'sha256_crypt',
+    'sha512_crypt',
+    # And always last one...
+    'plaintext'
+]
+
+_default_forms = {
+    'login_form': LoginForm,
+    'confirm_register_form': ConfirmRegisterForm,
+    'register_form': RegisterForm,
+    'forgot_password_form': ForgotPasswordForm,
+    'reset_password_form': ResetPasswordForm,
+    'change_password_form': ChangePasswordForm,
+    'send_confirmation_form': SendConfirmationForm,
+    'passwordless_login_form': PasswordlessLoginForm,
+}
+
+
+def _user_loader(user_id):
+    return _security.datastore.find_user(id=user_id)
+
+
+def _token_loader(token):
+    try:
+        data = _security.remember_token_serializer.loads(token)
+        user = _security.datastore.find_user(id=data[0])
+        if user and md5(user.password) == data[1]:
+            return user
+    except:
+        pass
+
+    return None
+
+
+def _identity_loader():
+    if not isinstance(current_user._get_current_object(), AnonymousUser):
+        identity = Identity(current_user.id)
+        return identity
+
+
+def _on_identity_loaded(sender, identity):
+    if hasattr(current_user, 'id'):
+        identity.provides.add(UserNeed(current_user.id))
+
+    for role in current_user.roles:
+        identity.provides.add(RoleNeed(role.name))
+
+    identity.user = current_user
+
+
+def _get_login_manager(app):
+    lm = LoginManager()
+    lm.anonymous_user = AnonymousUser
+    lm.login_view = '%s.login' % cv('BLUEPRINT_NAME', app=app)
+    lm.user_loader(_user_loader)
+    lm.token_loader(_token_loader)
+    lm.login_message, lm.login_message_category = cv('MSG_LOGIN', app=app)
+    lm.needs_refresh_message, lm.needs_refresh_message_category = cv('MSG_REFRESH', app=app)
+    lm.init_app(app)
+    return lm
+
+
+def _get_principal(app):
+    p = Principal(app, use_sessions=False)
+    p.identity_loader(_identity_loader)
+    return p
+
+
+def _get_pwd_context(app):
+    pw_hash = cv('PASSWORD_HASH', app=app)
+    if pw_hash not in _allowed_password_hash_schemes:
+        allowed = ', '.join(_allowed_password_hash_schemes[:-1]) + ' and ' + _allowed_password_hash_schemes[-1]
+        raise ValueError("Invalid hash scheme %r. Allowed values are %s" % (pw_hash, allowed))
+    return CryptContext(schemes=_allowed_password_hash_schemes, default=pw_hash)
+
+
+def _get_serializer(app, name):
+    secret_key = app.config.get('SECRET_KEY')
+    salt = app.config.get('SECURITY_%s_SALT' % name.upper())
+    return URLSafeTimedSerializer(secret_key=secret_key, salt=salt)
+
+
+def _get_state(app, datastore, **kwargs):
+    for key, value in get_config(app).items():
+        kwargs[key.lower()] = value
+
+    kwargs.update(dict(
+        app=app,
+        datastore=datastore,
+        login_manager=_get_login_manager(app),
+        principal=_get_principal(app),
+        pwd_context=_get_pwd_context(app),
+        remember_token_serializer=_get_serializer(app, 'remember'),
+        login_serializer=_get_serializer(app, 'login'),
+        reset_serializer=_get_serializer(app, 'reset'),
+        confirm_serializer=_get_serializer(app, 'confirm'),
+        _context_processors={},
+        _send_mail_task=None
+    ))
+
+    for key, value in _default_forms.items():
+        if key not in kwargs or not kwargs[key]:
+            kwargs[key] = value
+
+    return _SecurityState(**kwargs)
+
+
+def _context_processor():
+    return dict(url_for_security=url_for_security, security=_security)
+
+
+class RoleMixin(object):
+    """Mixin for `Role` model definitions"""
+    def __eq__(self, other):
+        return (self.name == other or \
+                self.name == getattr(other, 'name', None))
+
+    def __ne__(self, other):
+        return (self.name != other and
+                self.name != getattr(other, 'name', None))
+
+
+class UserMixin(BaseUserMixin):
+    """Mixin for `User` model definitions"""
+
+    def is_active(self):
+        """Returns `True` if the user is active."""
+        return self.active
+
+    def get_auth_token(self):
+        """Returns the user's authentication token."""
+        data = [str(self.id), md5(self.password)]
+        return _security.remember_token_serializer.dumps(data)
+
+    def has_role(self, role):
+        """Returns `True` if the user identifies with the specified role.
+
+        :param role: A role name or `Role` instance"""
+        return role in self.roles
+
+
+class AnonymousUser(AnonymousUserBase):
+    """AnonymousUser definition"""
+
+    def __init__(self):
+        super(AnonymousUser, self).__init__()
+        self.roles = ImmutableList()
+
+    def has_role(self, *args):
+        """Returns `False`"""
+        return False
+
+
+class _SecurityState(object):
+
+    def __init__(self, **kwargs):
+        for key, value in kwargs.items():
+            setattr(self, key.lower(), value)
+
+    def _add_ctx_processor(self, endpoint, fn):
+        group = self._context_processors.setdefault(endpoint, [])
+        fn not in group and group.append(fn)
+
+    def _run_ctx_processor(self, endpoint):
+        rv, fns = {}, []
+        for g in [None, endpoint]:
+            for fn in self._context_processors.setdefault(g, []):
+                rv.update(fn())
+        return rv
+
+    def context_processor(self, fn):
+        self._add_ctx_processor(None, fn)
+
+    def forgot_password_context_processor(self, fn):
+        self._add_ctx_processor('forgot_password', fn)
+
+    def login_context_processor(self, fn):
+        self._add_ctx_processor('login', fn)
+
+    def register_context_processor(self, fn):
+        self._add_ctx_processor('register', fn)
+
+    def reset_password_context_processor(self, fn):
+        self._add_ctx_processor('reset_password', fn)
+
+    def change_password_context_processor(self, fn):
+        self._add_ctx_processor('change_password', fn)
+
+    def send_confirmation_context_processor(self, fn):
+        self._add_ctx_processor('send_confirmation', fn)
+
+    def send_login_context_processor(self, fn):
+        self._add_ctx_processor('send_login', fn)
+
+    def mail_context_processor(self, fn):
+        self._add_ctx_processor('mail', fn)
+
+    def send_mail_task(self, fn):
+        self._send_mail_task = fn
+
+
+class Security(object):
+    """The :class:`Security` class initializes the Flask-Security extension.
+
+    :param app: The application.
+    :param datastore: An instance of a user datastore.
+    """
+    def __init__(self, app=None, datastore=None, **kwargs):
+        self.app = app
+        self.datastore = datastore
+
+        if app is not None and datastore is not None:
+            self._state = self.init_app(app, datastore, **kwargs)
+
+    def init_app(self, app, datastore=None, register_blueprint=True,
+        login_form=None, confirm_register_form=None,
+        register_form=None, forgot_password_form=None,
+        reset_password_form=None, change_password_form=None,
+        send_confirmation_form=None, passwordless_login_form=None):
+        """Initializes the Flask-Security extension for the specified
+        application and datastore implentation.
+
+        :param app: The application.
+        :param datastore: An instance of a user datastore.
+        :param register_blueprint: to register the Security blueprint or not.
+        """
+        datastore = datastore or self.datastore
+
+        for key, value in _default_config.items():
+            app.config.setdefault('SECURITY_' + key, value)
+
+        for key, value in _default_messages.items():
+            app.config.setdefault('SECURITY_MSG_' + key, value)
+
+        identity_loaded.connect_via(app)(_on_identity_loaded)
+
+        state = _get_state(app, datastore,
+                           login_form=login_form,
+                           confirm_register_form=confirm_register_form,
+                           register_form=register_form,
+                           forgot_password_form=forgot_password_form,
+                           reset_password_form=reset_password_form,
+                           change_password_form=change_password_form,
+                           send_confirmation_form=send_confirmation_form,
+                           passwordless_login_form=passwordless_login_form)
+
+        if register_blueprint:
+            app.register_blueprint(create_blueprint(state, __name__))
+            app.context_processor(_context_processor)
+
+        app.extensions['security'] = state
+
+        return state
+
+    def __getattr__(self, name):
+        return getattr(self._state, name, None)