diff options
author | BonfaceKilz | 2021-04-30 12:16:51 +0300 |
---|---|---|
committer | BonfaceKilz | 2021-04-30 13:45:15 +0300 |
commit | c7e661b8ff9f70955418fbc4527378904beb0cf4 (patch) | |
tree | 7a164b42d46e15b6f2775a50137b412c8713e2f3 /wqflask/db | |
parent | 385da724b63f57d0fb1bbe3476cea31ef837c081 (diff) | |
download | genenetwork2-c7e661b8ff9f70955418fbc4527378904beb0cf4.tar.gz |
autopep8: Fix E20-E27
Run:
python -m autopep8 --in-place --recrusive ./ --select\
E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,\
E242,E251,E252,E26,E265,E266,E27 -p 3
Diffstat (limited to 'wqflask/db')
-rw-r--r-- | wqflask/db/call.py | 6 | ||||
-rw-r--r-- | wqflask/db/gn_server.py | 2 | ||||
-rw-r--r-- | wqflask/db/webqtlDatabaseFunction.py | 10 |
3 files changed, 9 insertions, 9 deletions
diff --git a/wqflask/db/call.py b/wqflask/db/call.py index 0971d2a2..555878ad 100644 --- a/wqflask/db/call.py +++ b/wqflask/db/call.py @@ -12,7 +12,7 @@ from utility.tools import USE_GN_SERVER, LOG_SQL, GN_SERVER_URL from utility.benchmark import Bench from utility.logger import getLogger -logger = getLogger(__name__ ) +logger = getLogger(__name__) # from inspect import stack @@ -64,9 +64,9 @@ def gn_server(path): with Bench("GN_SERVER", LOG_SQL): res = () try: - res = urllib.request.urlopen(GN_SERVER_URL+path) + res = urllib.request.urlopen(GN_SERVER_URL + path) except: - res = urllib2.urlopen(GN_SERVER_URL+path) + res = urllib2.urlopen(GN_SERVER_URL + path) rest = res.read() res2 = json.loads(rest) logger.debug(res2) diff --git a/wqflask/db/gn_server.py b/wqflask/db/gn_server.py index da224112..6c7383d0 100644 --- a/wqflask/db/gn_server.py +++ b/wqflask/db/gn_server.py @@ -3,7 +3,7 @@ from db.call import gn_server from utility.logger import getLogger -logger = getLogger(__name__ ) +logger = getLogger(__name__) def menu_main(): return gn_server("/int/menu/main.json") diff --git a/wqflask/db/webqtlDatabaseFunction.py b/wqflask/db/webqtlDatabaseFunction.py index 2805febd..18ade405 100644 --- a/wqflask/db/webqtlDatabaseFunction.py +++ b/wqflask/db/webqtlDatabaseFunction.py @@ -24,24 +24,24 @@ from db.call import fetch1 from utility.tools import USE_GN_SERVER from utility.logger import getLogger -logger = getLogger(__name__ ) +logger = getLogger(__name__) ########################################################################### -#output: cursor instance -#function: connect to database and return cursor instance +# output: cursor instance +# function: connect to database and return cursor instance ########################################################################### def retrieve_species(group): """Get the species of a group (e.g. returns string "mouse" on "BXD" """ - result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (group), "/cross/"+group+".json", lambda r: (r["species"],))[0] + result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (group), "/cross/" + group + ".json", lambda r: (r["species"],))[0] logger.debug("retrieve_species result:", result) return result def retrieve_species_id(group): - result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (group), "/cross/"+group+".json", lambda r: (r["species_id"],))[0] + result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (group), "/cross/" + group + ".json", lambda r: (r["species_id"],))[0] logger.debug("retrieve_species_id result:", result) return result |