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authorBonfaceKilz2021-04-30 12:45:59 +0300
committerBonfaceKilz2021-04-30 13:45:15 +0300
commit03b6bcee689c1910bd850c6109cc37adc509cf5a (patch)
tree2ca686d7f1b6649bfbd593607aa406eff8efbfb7 /wqflask/base
parent6be1111fd76a2c47de7a20cc18bb9f4d8d2d4ffa (diff)
downloadgenenetwork2-03b6bcee689c1910bd850c6109cc37adc509cf5a.tar.gz
autopep8: Fix E501
Diffstat (limited to 'wqflask/base')
-rw-r--r--wqflask/base/data_set.py6
-rw-r--r--wqflask/base/mrna_assay_tissue_data.py3
-rw-r--r--wqflask/base/species.py3
-rw-r--r--wqflask/base/webqtlCaseData.py6
4 files changed, 12 insertions, 6 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index c14808d6..8ec0aaad 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -168,7 +168,8 @@ class DatasetType:
results = g.db.execute(sql_query_mapping[t] % group_name).fetchone()
if results:
self.datasets[name] = dataset_name_mapping[t]
- self.redis_instance.set("dataset_structure", json.dumps(self.datasets))
+ self.redis_instance.set(
+ "dataset_structure", json.dumps(self.datasets))
return True
return None
@@ -239,7 +240,8 @@ class Markers:
for line in bimbam_fh:
marker = {}
marker['name'] = line.split(delimiter)[0].rstrip()
- marker['Mb'] = float(line.split(delimiter)[1].rstrip()) / 1000000
+ marker['Mb'] = float(line.split(delimiter)[
+ 1].rstrip()) / 1000000
marker['chr'] = line.split(delimiter)[2].rstrip()
markers.append(marker)
diff --git a/wqflask/base/mrna_assay_tissue_data.py b/wqflask/base/mrna_assay_tissue_data.py
index cbc05738..9bb29664 100644
--- a/wqflask/base/mrna_assay_tissue_data.py
+++ b/wqflask/base/mrna_assay_tissue_data.py
@@ -88,6 +88,7 @@ class MrnaAssayTissueData:
if result.Symbol.lower() not in symbol_values_dict:
symbol_values_dict[result.Symbol.lower()] = [result.value]
else:
- symbol_values_dict[result.Symbol.lower()].append(result.value)
+ symbol_values_dict[result.Symbol.lower()].append(
+ result.value)
return symbol_values_dict
diff --git a/wqflask/base/species.py b/wqflask/base/species.py
index 44f133b5..e3c29916 100644
--- a/wqflask/base/species.py
+++ b/wqflask/base/species.py
@@ -55,4 +55,5 @@ class Chromosomes:
results = g.db.execute(query).fetchall()
for item in results:
- self.chromosomes[item.OrderId] = IndChromosome(item.Name, item.Length)
+ self.chromosomes[item.OrderId] = IndChromosome(
+ item.Name, item.Length)
diff --git a/wqflask/base/webqtlCaseData.py b/wqflask/base/webqtlCaseData.py
index 2d07ab9d..25b6cb8a 100644
--- a/wqflask/base/webqtlCaseData.py
+++ b/wqflask/base/webqtlCaseData.py
@@ -34,12 +34,14 @@ class webqtlCaseData:
def __init__(self, name, value=None, variance=None, num_cases=None, name2=None):
self.name = name
- self.name2 = name2 # Other name (for traits like BXD65a)
+ # Other name (for traits like BXD65a)
+ self.name2 = name2
self.value = value # Trait Value
self.variance = variance # Trait Variance
self.num_cases = num_cases # Number of individuals/cases
self.extra_attributes = None
- self.this_id = None # Set a sane default (can't be just "id" cause that's a reserved word)
+ # Set a sane default (can't be just "id" cause that's a reserved word)
+ self.this_id = None
self.outlier = None # Not set to True/False until later
def __repr__(self):