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| author | Lei Yan | 2016-10-29 05:25:37 +0000 |
|---|---|---|
| committer | Lei Yan | 2016-10-29 05:25:37 +0000 |
| commit | a2d45b9c5593e4ecf37850db69d3bcd8c673419d (patch) | |
| tree | 4c8c970ae633a2f44d9f145c49353823a2c2405d /wqflask/base | |
| parent | 28da8f4304f406b4eff5ad68757735a0cb524e94 (diff) | |
| download | genenetwork2-a2d45b9c5593e4ecf37850db69d3bcd8c673419d.tar.gz | |
For those case that we have multiple genotypes we would like to add a selector.
Diffstat (limited to 'wqflask/base')
| -rw-r--r-- | wqflask/base/data_set.py | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index fddfce58..918932fa 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -278,6 +278,7 @@ class DatasetGroup(object): self.incparentsf1 = False self.allsamples = None self._datasets = None + self.genofile = None def get_specified_markers(self, markers = []): self.markers = HumanMarkers(self.name, markers) @@ -408,7 +409,10 @@ class DatasetGroup(object): genotype_1 = reaper.Dataset() # reaper barfs on unicode filenames, so here we ensure it's a string - full_filename = str(locate(self.name+'.geno','genotype')) + if self.genofile: + full_filename = str(locate(self.genofile, 'genotype')) + else: + full_filename = str(locate(self.name + '.geno', 'genotype')) genotype_1.read(full_filename) if genotype_1.type == "group" and self.parlist: |