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authorzsloan2021-06-16 21:58:00 +0000
committerzsloan2021-06-16 21:58:00 +0000
commit4f06f22071898171cb7bbc12f5dfd42b05dc3208 (patch)
tree9cbb223aeb73638276de5a188804fbb084c5728c /wqflask/base
parentf5a7a54741cef7285e8862ceb2493fe3f451fb84 (diff)
downloadgenenetwork2-4f06f22071898171cb7bbc12f5dfd42b05dc3208.tar.gz
Added function as_dict to data_set.py for situations where we don't want to pass around the whole dataset object
Diffstat (limited to 'wqflask/base')
-rw-r--r--wqflask/base/data_set.py12
1 files changed, 12 insertions, 0 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 75ddf278..dc338971 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -559,6 +559,7 @@ class DataSet:
self.fullname = None
self.type = None
self.data_scale = None # ZS: For example log2
+ self.accession_id = None
self.setup()
@@ -575,6 +576,17 @@ class DataSet:
self.group.get_samplelist()
self.species = species.TheSpecies(self)
+ def as_dict(self):
+ return {
+ 'name': self.name,
+ 'shortname': self.shortname,
+ 'fullname': self.fullname,
+ 'type': self.type,
+ 'data_scale': self.data_scale,
+ 'group': self.group.name,
+ 'accession_id': self.accession_id
+ }
+
def get_accession_id(self):
if self.type == "Publish":
results = g.db.execute("""select InfoFiles.GN_AccesionId from InfoFiles, PublishFreeze, InbredSet where