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| author | Zachary Sloan | 2014-01-29 19:01:45 +0000 |
|---|---|---|
| committer | Zachary Sloan | 2014-01-29 19:01:45 +0000 |
| commit | d8dae52c0b534a37697962326f0fcbac781b0ce1 (patch) | |
| tree | a5aff47bd70556bd7e12e2caf377e1ec40dcc2cd /wqflask/base | |
| parent | 2df34255de526e1e016100a8772d2c8e10eb970f (diff) | |
| download | genenetwork2-d8dae52c0b534a37697962326f0fcbac781b0ce1.tar.gz | |
Limited number of markers in marker regression result table to
those with a lod score > 2
Did some work towards adding the colored backgrounds to chromosome
areas in the manhattan plot
Changed the last two chromosomes for human manhattan plots to
X and X/Y
Started work on writing a script that can independently run the
pyLMM code and store the results in redis
Diffstat (limited to 'wqflask/base')
| -rwxr-xr-x | wqflask/base/data_set.py | 1 |
1 files changed, 0 insertions, 1 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 0d295bed..9fbccf80 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -169,7 +169,6 @@ class Markers(object): for marker, p_value in itertools.izip(self.markers, p_values): marker['p_value'] = p_value if math.isnan(marker['p_value']) or marker['p_value'] <= 0: - print("p_value is:", marker['p_value']) marker['lod_score'] = 0 marker['lrs_value'] = 0 else: |