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| author | Zachary Sloan | 2014-01-23 21:52:03 +0000 |
|---|---|---|
| committer | Zachary Sloan | 2014-01-23 21:52:03 +0000 |
| commit | 6b367e3e2ee144aae5b79c50234faf0ea49adba6 (patch) | |
| tree | cca03b3c56b0482b24b138f214b845c554052806 /wqflask/base | |
| parent | bd48ca02770735cff482b1612399f236e8ac377f (diff) | |
| download | genenetwork2-6b367e3e2ee144aae5b79c50234faf0ea49adba6.tar.gz | |
Histogram is working
Fixed some bug with generating the manhattan plot for the HLC data set
Diffstat (limited to 'wqflask/base')
| -rwxr-xr-x | wqflask/base/data_set.py | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index d421f21e..0d295bed 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -185,6 +185,7 @@ class HumanMarkers(Markers): self.markers = [] for line in marker_data_fh: splat = line.strip().split() + print("splat:", splat) marker = {} marker['chr'] = int(splat[0]) marker['name'] = splat[1] @@ -204,6 +205,7 @@ class HumanMarkers(Markers): # #Using -log(p) for the LRS; need to ask Rob how he wants to get LRS from p-values # marker['lrs_value'] = -math.log10(marker['p_value']) * 4.61 + print("p_values2:", p_values) super(HumanMarkers, self).add_pvalues(p_values) with Bench("deleting markers"): |