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authorZachary Sloan2013-02-14 17:45:10 -0600
committerZachary Sloan2013-02-14 17:45:10 -0600
commite334da7dd55dd102c471a144ef0a63389830a256 (patch)
treeb2db2326a09c604f77a68da9c9e54fac1488580f /wqflask/base
parent745bcbeabdf5794b5f3185fcd497dfce04f09b84 (diff)
downloadgenenetwork2-e334da7dd55dd102c471a144ef0a63389830a256.tar.gz
Have marker regression results displaying as a scatterplot (just the points)
using d3.js
Diffstat (limited to 'wqflask/base')
-rwxr-xr-xwqflask/base/data_set.py2
1 files changed, 2 insertions, 0 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index d4e97370..0b3b5248 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -77,9 +77,11 @@ class Markers(object):
def add_pvalues(self, p_values):
for marker, p_value in itertools.izip(self.markers, p_values):
marker['p_value'] = p_value
+ marker['lod_score'] = -math.log10(marker['p_value'])
#Using -log(p) for the LRS; need to ask Rob how he wants to get LRS from p-values
marker['lrs_value'] = -math.log10(marker['p_value']) * 4.61
+
class DatasetGroup(object):
"""
Each group has multiple datasets; each species has multiple groups.