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authorPjotr Prins2016-02-23 11:16:33 +0000
committerPjotr Prins2016-04-20 09:00:21 +0000
commit218fd0c7666583748098f0b7b4286b6d1cbf6838 (patch)
treea711ba23d6036ebcd8c33e322d6f45592993d473 /wqflask/base
parenta5ff6520ad29266e1647ce54ad6b2c0f200dfe9a (diff)
downloadgenenetwork2-218fd0c7666583748098f0b7b4286b6d1cbf6838.tar.gz
[PATCH 033/100] Refactored file searching
Diffstat (limited to 'wqflask/base')
-rwxr-xr-xwqflask/base/data_set.py16
1 files changed, 8 insertions, 8 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 9ffc09ac..ce13dd77 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -44,7 +44,7 @@ from dbFunction import webqtlDatabaseFunction
 from utility import webqtlUtil
 from utility.benchmark import Bench
 from utility import chunks
-from utility.tools import locate
+from utility.tools import locate, locate_without_error
 
 from maintenance import get_group_samplelists
 
@@ -405,15 +405,15 @@ class DatasetGroup(object):
         else:
             print("Cache not hit")
 
-            geno_file_path = locate(self.name+".geno",'genotype')
-            mapping_file_path = locate(self.name+".fam",'mapping')
-            if os.path.isfile(mapping_file_path):
-                self.samplelist = get_group_samplelists.get_samplelist("plink", mapping_file_path)
-            elif os.path.isfile(geno_file_path):
-                self.samplelist = get_group_samplelists.get_samplelist("geno", geno_file_path)
+            genotype_fn = locate_without_error(self.name+".geno",'genotype')
+            mapping_fn = locate_without_error(self.name+".fam",'mapping')
+            if mapping_fn:
+                self.samplelist = get_group_samplelists.get_samplelist("plink", mapping_fn)
+            elif genotype_fn:
+                self.samplelist = get_group_samplelists.get_samplelist("geno", genotype_fn)
             else:
                 self.samplelist = None
-            #print("after get_samplelist")
+            print("Sample list: ",self.samplelist)
             Redis.set(key, json.dumps(self.samplelist))
             Redis.expire(key, 60*5)