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authorzsloan2015-05-12 16:01:59 +0000
committerzsloan2015-05-12 16:01:59 +0000
commit12b4663b495fed487d52c76656b64ca08273e9a9 (patch)
tree3fc351427b62ad114f30fd22c78ca7e988ce8a28 /wqflask/base
parent34382319b10b1a6c36cc5f7f33c8aeec23307b86 (diff)
parent2eeaf2f6df9deb3f89db0b5821d784b93eb4bc36 (diff)
downloadgenenetwork2-12b4663b495fed487d52c76656b64ca08273e9a9.tar.gz
Merge branch 'master' of github.com:genenetwork/genenetwork2
Diffstat (limited to 'wqflask/base')
-rwxr-xr-xwqflask/base/trait.py28
1 files changed, 22 insertions, 6 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index f3648b80..8930c917 100755
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -53,7 +53,8 @@ class GeneralTrait(object):
         self.pvalue = None
         self.mean = None
         self.num_overlap = None
-
+        self.strand_probe = None
+        self.symbol = None
 
         if kw.get('fullname'):
             name2 = value.split("::")
@@ -533,12 +534,27 @@ class GeneralTrait(object):
         return setDescription
 
     @property
+    def name_header_fmt(self):
+        '''Return a human-readable name for use in page header'''
+        if self.dataset.type == 'ProbeSet':
+            return self.symbol
+        elif self.dataset.type == 'Geno':
+            return self.name
+        elif self.dataset.type == 'Publish':
+            return self.post_publication_abbreviation
+        else:
+            return "unnamed"
+
+    @property
     def description_fmt(self):
         '''Return a text formated description'''
-        if self.description:
-            formatted = self.description
-            if self.probe_target_description:
-                formatted += "; " + self.probe_target_description
+        if self.dataset.type == 'ProbeSet':
+            if self.description:
+                formatted = self.description
+                if self.probe_target_description:
+                    formatted += "; " + self.probe_target_description
+        elif self.dataset.type == 'Publish':
+            formatted = self.post_publication_description
         else:
             formatted = "Not available"
         return formatted.capitalize()
@@ -652,4 +668,4 @@ def get_sample_data():
     #    jsonable_sample_data[sample] = trait_ob.data[sample].value
     #
     #return jsonable_sample_data
-    
\ No newline at end of file
+