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authorFrederick Muriuki Muriithi2023-06-20 08:11:04 +0300
committerFrederick Muriuki Muriithi2023-06-20 13:36:50 +0300
commit8f3b998db0698298f828698e93e1f8f19a9c23d7 (patch)
tree7655b52d0f5f7c42e75236d4942eef8e255a7508 /wqflask/base/webqtlConfig.py
parent24450cd319ad3bc43f119933cd9d6cf165bc4682 (diff)
downloadgenenetwork2-8f3b998db0698298f828698e93e1f8f19a9c23d7.tar.gz
Restore configuration variables' names
The names had been changed when refactoring the code but can now be restored.
Diffstat (limited to 'wqflask/base/webqtlConfig.py')
-rw-r--r--wqflask/base/webqtlConfig.py35
1 files changed, 17 insertions, 18 deletions
diff --git a/wqflask/base/webqtlConfig.py b/wqflask/base/webqtlConfig.py
index 600c6800..a5797f60 100644
--- a/wqflask/base/webqtlConfig.py
+++ b/wqflask/base/webqtlConfig.py
@@ -91,34 +91,33 @@ def init_app(app):
TEMPDIR = app.config["TEMPDIR"]
mkdir_with_temp_dir = lambda child: mkdir_with_assert_writable(
TEMPDIR, child)
- WEBQTL_TMPDIR = mkdir_with_temp_dir("/gn2/")
- app.config["WEBQTL_TMPDIR"] = WEBQTL_TMPDIR
- app.config["TMPDIR"] = WEBQTL_TMPDIR
- app.config["WEBQTL_CACHEDIR"] = mkdir_with_temp_dir(
- f"{WEBQTL_TMPDIR}cache/")
+ TMPDIR = mkdir_with_temp_dir("/gn2/")
+ app.config["TMPDIR"] = TMPDIR
+ app.config["CACHEDIR"] = mkdir_with_temp_dir(
+ f"{TMPDIR}cache/")
# We can no longer write into the git tree:
- app.config["WEBQTL_GENERATED_IMAGE_DIR"] = mkdir_with_temp_dir(
- f"{WEBQTL_TMPDIR}generated/")
- app.config["WEBQTL_GENERATED_TEXT_DIR"] = mkdir_with_temp_dir(
- f"{WEBQTL_TMPDIR}generated_text/")
+ app.config["GENERATED_IMAGE_DIR"] = mkdir_with_temp_dir(
+ f"{TMPDIR}generated/")
+ app.config["GENERATED_TEXT_DIR"] = mkdir_with_temp_dir(
+ f"{TMPDIR}generated_text/")
# Flat file directories
- app.config["WEBQTL_GENODIR"] = flat_files(app, 'genotype/')
+ app.config["GENODIR"] = flat_files(app, 'genotype/')
# JSON genotypes are OBSOLETE
- WEBQTL_JSON_GENODIR = flat_files(app, 'genotype/json/')
- if not valid_path(WEBQTL_JSON_GENODIR):
+ JSON_GENODIR = flat_files(app, 'genotype/json/')
+ if not valid_path(JSON_GENODIR):
# fall back on old location (move the dir, FIXME)
- WEBQTL_JSON_GENODIR = flat_files('json')
- app.config["WEBQTL_JSON_GENODIR"] = WEBQTL_JSON_GENODIR
+ JSON_GENODIR = flat_files('json')
+ app.config["JSON_GENODIR"] = JSON_GENODIR
- app.config["WEBQTL_TEXTDIR"] = os.path.join(
+ app.config["TEXTDIR"] = os.path.join(
app.config.get("GNSHARE", "/gnshare/gn/"),
"web/ProbeSetFreeze_DataMatrix")
# Are we using the following...?
- app.config["WEBQTL_PORTADDR"] = "http://50.16.251.170"
- app.config["WEBQTL_INFOPAGEHREF"] = '/dbdoc/%s.html'
- app.config["WEBQTL_CGIDIR"] = '/webqtl/' # XZ: The variable name 'CGIDIR' should be changed to 'PYTHONDIR'
+ app.config["PORTADDR"] = "http://50.16.251.170"
+ app.config["INFOPAGEHREF"] = '/dbdoc/%s.html'
+ app.config["CGIDIR"] = '/webqtl/' # XZ: The variable name 'CGIDIR' should be changed to 'PYTHONDIR'
return app