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| author | zsloan | 2019-05-14 12:40:18 -0500 |
|---|---|---|
| committer | zsloan | 2019-05-14 12:40:18 -0500 |
| commit | 15d64a94eacf6b883fcc1ef2a49aa6ca7934eb96 (patch) | |
| tree | 0fa2a810908048ca6db861dcb83321d32195f9d3 /wqflask/base/webqtlConfig.py | |
| parent | fa8efc4ead436c1776415f5fdc1c302d73d6bc89 (diff) | |
| download | genenetwork2-15d64a94eacf6b883fcc1ef2a49aa6ca7934eb96.tar.gz | |
Added all of the third party links from GN1
Fixed issue with the script that generates the drop-down menus where phenotype/genotype datasets wouldn't show up for species without any mRNA assay datasets
Added icon for smartphones/tablets
Made error more informative for main search
Added gene symbol column to collections (need to add something that removes the column if it's all empty)
Diffstat (limited to 'wqflask/base/webqtlConfig.py')
| -rw-r--r-- | wqflask/base/webqtlConfig.py | 15 |
1 files changed, 15 insertions, 0 deletions
diff --git a/wqflask/base/webqtlConfig.py b/wqflask/base/webqtlConfig.py index c9052c83..b14cc4b0 100644 --- a/wqflask/base/webqtlConfig.py +++ b/wqflask/base/webqtlConfig.py @@ -36,6 +36,21 @@ UTHSC_BLAT = 'http://ucscbrowser.genenetwork.org/cgi-bin/hgBlat?org=%s&db=%s&typ UTHSC_BLAT2 = 'http://ucscbrowserbeta.genenetwork.org/cgi-bin/hgBlat?org=%s&db=%s&type=0&sort=0&output=0&userSeq=%s' GENOMEBROWSER_URL="https://genome.ucsc.edu/cgi-bin/hgTracks?db=%s&position=%s" NCBI_LOCUSID = "http://www.ncbi.nlm.nih.gov/gene?cmd=Retrieve&dopt=Graphics&list_uids=%s" +GENBANK_ID = "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Nucleotide&cmd=search&doptcmdl=DocSum&term=%s" +OMIM_ID = "http://www.ncbi.nlm.nih.gov/omim/%s" +UNIGEN_ID = "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=%s&CID=%s" +HOMOLOGENE_ID = "http://www.ncbi.nlm.nih.gov/homologene/?term=%s" +GENOTATION_URL = "http://www.genotation.org/Getd2g.pl?gene_list=%s" +GTEX_URL = "https://www.gtexportal.org/home/gene/%s" +GENEBRIDGE_URL = "https://www.systems-genetics.org/modules_by_gene/%s?organism=%s" +UCSC_REFSEQ = "http://genome.cse.ucsc.edu/cgi-bin/hgTracks?db=%s&hgg_gene=%s&hgg_chrom=chr%s&hgg_start=%s&hgg_end=%s" +BIOGPS_URL = "http://biogps.org/?org=%s#goto=genereport&id=%s" +STRING_URL = "http://string-db.org/newstring_cgi/show_network_section.pl?identifier=%s" +PANTHER_URL = "http://www.pantherdb.org/genes/geneList.do?searchType=basic&fieldName=all&organism=all&listType=1&fieldValue=%s" +GEMMA_URL = "http://www.chibi.ubc.ca/Gemma/gene/showGene.html?ncbiid=%s" +ABA_URL = "http://mouse.brain-map.org/search/show?search_type=gene&search_term=%s" +EBIGWAS_URL = "https://www.ebi.ac.uk/gwas/search?query=%s" +WIKI_PI_URL = "http://severus.dbmi.pitt.edu/wiki-pi/index.php/search?q=%s" ENSEMBLETRANSCRIPT_URL="http://useast.ensembl.org/Mus_musculus/Transcript/Idhistory?t=%s" DBSNP = 'http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=%s' |