Merge branch 'flask' of http://github.com/zsloan/genenetwork

1 files changed, 72 insertions, 0 deletions

diff --git a/wqflask/base/webqtlCaseData.py b/wqflask/base/webqtlCaseData.py
new file mode 100755
index 00000000..42763aed
--- /dev/null
+++ b/wqflask/base/webqtlCaseData.py
@@ -0,0 +1,72 @@
+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+print("Mr. Mojo Risin 2")
+
+class webqtlCaseData(object):
+    """one case data in one trait"""
+
+    def __init__(self, name, value=None, variance=None, num_cases=None):
+        self.name = name
+        self.value = value                  # Trait Value
+        self.variance = variance            # Trait Variance
+        self.num_cases = num_cases          # Number of individuals/cases
+        self.extra_attributes = None
+        self.this_id = None   # Set a sane default (can't be just "id" cause that's a reserved word)
+        self.outlier = None   # Not set to True/False until later
+
+    def __repr__(self):
+        str = "<webqtlCaseData> "
+        if self.value != None:
+            str += "value=%2.3f" % self.value
+        if self.variance != None:
+            str += " variance=%2.3f" % self.variance
+        if self.num_cases != None:
+            str += " ndata=%d" % self.num_cases
+        return str
+    
+    @property
+    def class_outlier(self):
+        """Template helper"""
+        if self.outlier:
+            return "outlier"
+        else:
+            return ""
+    
+    @property
+    def display_value(self):
+        if self.value:
+            return "%2.3f" % self.value
+        else:
+            return "x"
+        
+    @property
+    def display_variance(self):
+        if self.variance:
+            return "%2.3f" % self.variance
+        else:
+            return "x"
+