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authorZachary Sloan2013-01-11 23:59:41 +0000
committerZachary Sloan2013-01-11 23:59:41 +0000
commit2b2970d167c5b555e0e0ad0b34b72f817c1fac91 (patch)
tree36fa8c708138fff03593e0f50cc933bcb62b5592 /wqflask/base/webqtlCaseData.py
parent1db9237a05fd27c80dc963db9916072594156198 (diff)
parentd39b691994a395c45fa242de6d64d12a5470af10 (diff)
downloadgenenetwork2-2b2970d167c5b555e0e0ad0b34b72f817c1fac91.tar.gz
Merge branch 'flask' of http://github.com/zsloan/genenetwork
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+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+print("Mr. Mojo Risin 2")
+
+class webqtlCaseData(object):
+ """one case data in one trait"""
+
+ def __init__(self, name, value=None, variance=None, num_cases=None):
+ self.name = name
+ self.value = value # Trait Value
+ self.variance = variance # Trait Variance
+ self.num_cases = num_cases # Number of individuals/cases
+ self.extra_attributes = None
+ self.this_id = None # Set a sane default (can't be just "id" cause that's a reserved word)
+ self.outlier = None # Not set to True/False until later
+
+ def __repr__(self):
+ str = "<webqtlCaseData> "
+ if self.value != None:
+ str += "value=%2.3f" % self.value
+ if self.variance != None:
+ str += " variance=%2.3f" % self.variance
+ if self.num_cases != None:
+ str += " ndata=%d" % self.num_cases
+ return str
+
+ @property
+ def class_outlier(self):
+ """Template helper"""
+ if self.outlier:
+ return "outlier"
+ else:
+ return ""
+
+ @property
+ def display_value(self):
+ if self.value:
+ return "%2.3f" % self.value
+ else:
+ return "x"
+
+ @property
+ def display_variance(self):
+ if self.variance:
+ return "%2.3f" % self.variance
+ else:
+ return "x"
+