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author | zsloan | 2020-05-28 20:24:01 -0500 |
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committer | zsloan | 2020-05-28 20:24:01 -0500 |
commit | ff94904574c51eeb7aecb327d6f2679fa4a60fb4 (patch) | |
tree | 9f439523b55dc9531cfee96147e996d280e05a30 /wqflask/base/trait.py | |
parent | 55b654a9f40bb247272c45671c58c772874f43f6 (diff) | |
download | genenetwork2-ff94904574c51eeb7aecb327d6f2679fa4a60fb4.tar.gz |
Added lines calling proxy for publish datasets + added some resource redis queries and a missing import for the hmac functions
Diffstat (limited to 'wqflask/base/trait.py')
-rw-r--r-- | wqflask/base/trait.py | 12 |
1 files changed, 8 insertions, 4 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index e454c593..1b7cb23c 100644 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -5,9 +5,6 @@ import resource import codecs import requests -import redis -Redis = redis.StrictRedis() - from base import webqtlConfig from base.webqtlCaseData import webqtlCaseData from base.data_set import create_dataset @@ -15,6 +12,8 @@ from db import webqtlDatabaseFunction from utility import webqtlUtil from utility import hmac from utility.tools import GN2_BASE_URL +from utility.redis_tools import get_redis_conn +Redis = get_redis_conn() from wqflask import app @@ -349,8 +348,13 @@ def jsonable_table_row(trait, dataset_name, index): def retrieve_trait_info(trait, dataset, get_qtl_info=False): assert dataset, "Dataset doesn't exist" - + if dataset.type == 'Publish': + resource_id = hmac.data_hmac("{}:{}".format(dataset.id, trait.name)) + + the_url = "http://localhost:8080/run_action/?resource={}&user={}&branch=data&action=view".format(resource_id, g.user_session.user_id) + trait_data = json.loads(requests.get("http://localhost:8080/run_action/?resource={}&user={}&branch=data&action=view".format(resource_id, g.user_session.user_id))) + query = """ SELECT PublishXRef.Id, InbredSet.InbredSetCode, Publication.PubMed_ID, |