aboutsummaryrefslogtreecommitdiff
path: root/wqflask/base/trait.py
diff options
context:
space:
mode:
authorpjotrp2015-05-12 12:06:59 -0500
committerpjotrp2015-05-12 12:06:59 -0500
commitf228118ac112f3ebab5faf41ac9e1bc2a6e2c0fa (patch)
tree32abd6c003bec6e883f0cf63c37c711b30cdeb3f /wqflask/base/trait.py
parent300f0defa19f20b294bfde2931fb9eaa77d918fd (diff)
parent2eeaf2f6df9deb3f89db0b5821d784b93eb4bc36 (diff)
downloadgenenetwork2-f228118ac112f3ebab5faf41ac9e1bc2a6e2c0fa.tar.gz
Merge branch 'master' of github.com:genenetwork/genenetwork2
Diffstat (limited to 'wqflask/base/trait.py')
-rwxr-xr-xwqflask/base/trait.py28
1 files changed, 22 insertions, 6 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index f3648b80..8930c917 100755
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -53,7 +53,8 @@ class GeneralTrait(object):
self.pvalue = None
self.mean = None
self.num_overlap = None
-
+ self.strand_probe = None
+ self.symbol = None
if kw.get('fullname'):
name2 = value.split("::")
@@ -533,12 +534,27 @@ class GeneralTrait(object):
return setDescription
@property
+ def name_header_fmt(self):
+ '''Return a human-readable name for use in page header'''
+ if self.dataset.type == 'ProbeSet':
+ return self.symbol
+ elif self.dataset.type == 'Geno':
+ return self.name
+ elif self.dataset.type == 'Publish':
+ return self.post_publication_abbreviation
+ else:
+ return "unnamed"
+
+ @property
def description_fmt(self):
'''Return a text formated description'''
- if self.description:
- formatted = self.description
- if self.probe_target_description:
- formatted += "; " + self.probe_target_description
+ if self.dataset.type == 'ProbeSet':
+ if self.description:
+ formatted = self.description
+ if self.probe_target_description:
+ formatted += "; " + self.probe_target_description
+ elif self.dataset.type == 'Publish':
+ formatted = self.post_publication_description
else:
formatted = "Not available"
return formatted.capitalize()
@@ -652,4 +668,4 @@ def get_sample_data():
# jsonable_sample_data[sample] = trait_ob.data[sample].value
#
#return jsonable_sample_data
- \ No newline at end of file
+