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authorLei Yan2013-06-25 21:50:53 +0000
committerLei Yan2013-06-25 21:50:53 +0000
commit54ce9aec126d8d642755c709e0d6b3dc50a91d29 (patch)
treeb3df8f299215e26fd95137367955d5dbe5d8868c /wqflask/base/data_set.py
parent615b861dfd05c04df2e1a753dd135b07c1d88a94 (diff)
parenta0a1d8b70e02871328fb044c7ae190f805b0a04e (diff)
downloadgenenetwork2-54ce9aec126d8d642755c709e0d6b3dc50a91d29.tar.gz
Merge git://github.com/zsloan/genenetwork into flask
Diffstat (limited to 'wqflask/base/data_set.py')
-rwxr-xr-xwqflask/base/data_set.py12
1 files changed, 6 insertions, 6 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 07fe9cd9..1668940c 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -779,14 +779,14 @@ class MrnaAssayDataSet(DataSet):
#Max LRS and its Locus location
if this_trait.lrs and this_trait.locus:
- self.cursor.execute("""
+ query = """
select Geno.Chr, Geno.Mb from Geno, Species
- where Species.Name = '%s' and
- Geno.Name = '%s' and
+ where Species.Name = '{}' and
+ Geno.Name = '{}' and
Geno.SpeciesId = Species.Id
- """ % (species, this_trait.locus))
- result = self.cursor.fetchone()
-
+ """.format(species, this_trait.locus)
+ result = g.db.execute(query).fetchone()
+
if result:
#if result[0] and result[1]:
# lrs_chr = result[0]