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authorZachary Sloan2014-01-23 21:52:03 +0000
committerZachary Sloan2014-01-23 21:52:03 +0000
commit6b367e3e2ee144aae5b79c50234faf0ea49adba6 (patch)
treecca03b3c56b0482b24b138f214b845c554052806 /wqflask/base/data_set.py
parentbd48ca02770735cff482b1612399f236e8ac377f (diff)
downloadgenenetwork2-6b367e3e2ee144aae5b79c50234faf0ea49adba6.tar.gz
Histogram is working
Fixed some bug with generating the manhattan plot for the HLC data set
Diffstat (limited to 'wqflask/base/data_set.py')
-rwxr-xr-xwqflask/base/data_set.py2
1 files changed, 2 insertions, 0 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index d421f21e..0d295bed 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -185,6 +185,7 @@ class HumanMarkers(Markers):
self.markers = []
for line in marker_data_fh:
splat = line.strip().split()
+ print("splat:", splat)
marker = {}
marker['chr'] = int(splat[0])
marker['name'] = splat[1]
@@ -204,6 +205,7 @@ class HumanMarkers(Markers):
# #Using -log(p) for the LRS; need to ask Rob how he wants to get LRS from p-values
# marker['lrs_value'] = -math.log10(marker['p_value']) * 4.61
+ print("p_values2:", p_values)
super(HumanMarkers, self).add_pvalues(p_values)
with Bench("deleting markers"):