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| author | zsloan | 2016-05-23 22:23:51 +0000 |
|---|---|---|
| committer | zsloan | 2016-05-23 22:23:51 +0000 |
| commit | 29b50856ab9b9ef87b81228b782dd6bebe28b7c1 (patch) | |
| tree | 5dd197acac06dfaea5aae7823b6e903695207c00 /wqflask/base/data_set.py | |
| parent | f7520d9a6e05b103bab983c31ef0e53fad59f5e6 (diff) | |
| download | genenetwork2-29b50856ab9b9ef87b81228b782dd6bebe28b7c1.tar.gz | |
Reaper mapping results are now correct and account for samples with two names (like BXD65a)
R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues.
Diffstat (limited to 'wqflask/base/data_set.py')
| -rw-r--r-- | wqflask/base/data_set.py | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 053b45fc..4953e728 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -711,7 +711,7 @@ class PhenotypeDataSet(DataSet): def retrieve_sample_data(self, trait): query = """ SELECT - Strain.Name, PublishData.value, PublishSE.error, NStrain.count + Strain.Name, PublishData.value, PublishSE.error, NStrain.count, Strain.Name2 FROM (PublishData, Strain, PublishXRef, PublishFreeze) left join PublishSE on @@ -803,7 +803,7 @@ class GenotypeDataSet(DataSet): def retrieve_sample_data(self, trait): query = """ SELECT - Strain.Name, GenoData.value, GenoSE.error, GenoData.Id + Strain.Name, GenoData.value, GenoSE.error, GenoData.Id, Sample.Name2 FROM (GenoData, GenoFreeze, Strain, Geno, GenoXRef) left join GenoSE on @@ -1031,7 +1031,7 @@ class MrnaAssayDataSet(DataSet): def retrieve_sample_data(self, trait): query = """ SELECT - Strain.Name, ProbeSetData.value, ProbeSetSE.error, ProbeSetData.Id + Strain.Name, ProbeSetData.value, ProbeSetSE.error, ProbeSetData.Id, Strain.Name2 FROM (ProbeSetData, ProbeSetFreeze, Strain, ProbeSet, ProbeSetXRef) left join ProbeSetSE on |