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| author | Pjotr Prins | 2016-04-20 08:37:55 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2016-04-20 08:37:55 +0000 |
| commit | af7d0bca229f3ebaa80a16d1ce3a2bf1a8abd5df (patch) | |
| tree | 61dfc53eed849cb0f136066de0256f1cfb3beb5b /wqflask/base/data_set.py | |
| parent | c76299fa981add7b8cf56126c8d7ffeb9a6c4034 (diff) | |
| download | genenetwork2-af7d0bca229f3ebaa80a16d1ce3a2bf1a8abd5df.tar.gz | |
[PATCH 023/100] WIP fixing all paths
Diffstat (limited to 'wqflask/base/data_set.py')
| -rwxr-xr-x | wqflask/base/data_set.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index e37a838f..0e5a3ac1 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -405,10 +405,11 @@ class DatasetGroup(object): #print("Cache not hit") from utility.tools import plink_command - PLINK_PATH,PLINK_COMMAND = plink_command() + PLINK_RUN = plink_command() geno_file_path = webqtlConfig.GENODIR+self.name+".geno" plink_file_path = PLINK_PATH+"/"+self.name+".fam" + # @FIXME PJOTR/ZACH: .fam files should go into FLATFILES if os.path.isfile(plink_file_path): self.samplelist = get_group_samplelists.get_samplelist("plink", plink_file_path) |