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authorzsloan2021-07-09 16:49:42 -0500
committerGitHub2021-07-09 16:49:42 -0500
commitbce7aaab7d65309dc0e755a74bf8339a721f2cd9 (patch)
tree9819308f9ae2a56b2810001720c0c44aa49d8558 /wqflask/base/data_set.py
parentbc2869179f2483d9ad5995d3abb0c9dbc1024acd (diff)
parent9f823f4e07be834d5c9e918902f7cf626b85dcba (diff)
downloadgenenetwork2-bce7aaab7d65309dc0e755a74bf8339a721f2cd9.tar.gz
Merge pull request #587 from zsloan/feature/use_gn3_for_correlations
Feature/use gn3 for correlations
Diffstat (limited to 'wqflask/base/data_set.py')
-rw-r--r--wqflask/base/data_set.py12
1 files changed, 12 insertions, 0 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 6dc44829..4cb82665 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -557,6 +557,7 @@ class DataSet:
self.fullname = None
self.type = None
self.data_scale = None # ZS: For example log2
+ self.accession_id = None
self.setup()
@@ -573,6 +574,17 @@ class DataSet:
self.group.get_samplelist()
self.species = species.TheSpecies(self)
+ def as_dict(self):
+ return {
+ 'name': self.name,
+ 'shortname': self.shortname,
+ 'fullname': self.fullname,
+ 'type': self.type,
+ 'data_scale': self.data_scale,
+ 'group': self.group.name,
+ 'accession_id': self.accession_id
+ }
+
def get_accession_id(self):
if self.type == "Publish":
results = g.db.execute("""select InfoFiles.GN_AccesionId from InfoFiles, PublishFreeze, InbredSet where