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authorPjotr Prins2016-04-20 08:37:55 +0000
committerPjotr Prins2016-04-20 08:37:55 +0000
commitaf7d0bca229f3ebaa80a16d1ce3a2bf1a8abd5df (patch)
tree61dfc53eed849cb0f136066de0256f1cfb3beb5b /wqflask/base/data_set.py
parentc76299fa981add7b8cf56126c8d7ffeb9a6c4034 (diff)
downloadgenenetwork2-af7d0bca229f3ebaa80a16d1ce3a2bf1a8abd5df.tar.gz
[PATCH 023/100] WIP fixing all paths
Diffstat (limited to 'wqflask/base/data_set.py')
-rwxr-xr-xwqflask/base/data_set.py3
1 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index e37a838f..0e5a3ac1 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -405,10 +405,11 @@ class DatasetGroup(object):
#print("Cache not hit")
from utility.tools import plink_command
- PLINK_PATH,PLINK_COMMAND = plink_command()
+ PLINK_RUN = plink_command()
geno_file_path = webqtlConfig.GENODIR+self.name+".geno"
plink_file_path = PLINK_PATH+"/"+self.name+".fam"
+ # @FIXME PJOTR/ZACH: .fam files should go into FLATFILES
if os.path.isfile(plink_file_path):
self.samplelist = get_group_samplelists.get_samplelist("plink", plink_file_path)