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authorPjotr Prins2015-03-30 09:52:42 +0200
committerPjotr Prins2015-03-30 09:52:42 +0200
commit56177b238dc7d3b225caeda25fd558d98b17b3c6 (patch)
tree61368594122a99ee2457e57145e97f475b3a29b9 /wqflask/base/admin.py
parentf651014b577f3af0c88f2669ec2f8d0260f398dd (diff)
parent1dd2981a25cdb33ab575206020490c7cf799e2da (diff)
downloadgenenetwork2-56177b238dc7d3b225caeda25fd558d98b17b3c6.tar.gz
Merge branch 'master' of https://github.com/zsloan/genenetwork2 into zsloan
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-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-
-
-
-
-#XZ, 04/02/2009: we should put this into database.
-
-
-###LIST of databases used into gene name query
-
-
-ADMIN_search_dbs = {
- 'rat': {'PERITONEAL FAT': ['FT_2A_0605_Rz'],
- 'KIDNEY': ['KI_2A_0405_Rz'],
- 'ADRENAL GLAND': ['HXB_Adrenal_1208'],
- 'HEART': ['HXB_Heart_1208']
- },
- 'mouse': {'CEREBELLUM': ['CB_M_0305_R'],
- 'STRIATUM': ['SA_M2_0905_R', 'SA_M2_0405_RC', 'UTHSC_1107_RankInv', 'Striatum_Exon_0209'],
- 'HIPPOCAMPUS': ['HC_M2_0606_R', 'UMUTAffyExon_0209_RMA'],
- 'WHOLE BRAIN': ['BR_M2_1106_R', 'IBR_M_0106_R', 'BRF2_M_0805_R', 'UCLA_BHF2_BRAIN_0605'],
- 'LIVER': ['LV_G_0106_B', 'UCLA_BHF2_LIVER_0605'],
- 'EYE': ['Eye_M2_0908_R'],
- 'HEMATOPOIETIC STEM CELLS': ['HC_U_0304_R'],
- 'KIDNEY': ['MA_M2_0806_R'],
- 'MAMMARY TUMORS': ['MA_M_0704_R', 'NCI_Agil_Mam_Tum_RMA_0409'],
- 'PREFRONTAL CORTEX': ['VCUSal_1206_R'],
- 'SPLEEN': ['IoP_SPL_RMA_0509'],
- 'NUCLEUS ACCUMBENS': ['VCUSalo_1007_R'],
- 'NEOCORTEX': ['HQFNeoc_0208_RankInv'],
- 'ADIPOSE': ['UCLA_BHF2_ADIPOSE_0605'],
- 'RETINA': ['Illum_Retina_BXD_RankInv0410']
- },
- 'human': {
- 'LYMPHOBLAST B CELL': ['Human_1008', 'UT_CEPH_RankInv0909'],
- 'WHOLE BRAIN': ['GSE5281_F_RMA0709', 'GSE15222_F_RI_0409']
- }
- }
-
-
-###LIST of tissue alias
-
-ADMIN_tissue_alias = {'CEREBELLUM': ['Cb'],
- 'STRIATUM': ['Str'],
- 'HIPPOCAMPUS': ['Hip'],
- 'WHOLE BRAIN': ['Brn'],
- 'LIVER': ['Liv'],
- 'EYE': ['Eye'],
- 'PERITONEAL FAT': ['Fat'],
- 'HEMATOPOIETIC STEM CELLS': ['Hsc'],
- 'KIDNEY': ['Kid'],
- 'ADRENAL GLAND': ['Adr'],
- 'HEART': ['Hea'],
- 'MAMMARY TUMORS': ['Mam'],
- 'PREFRONTAL CORTEX': ['Pfc'],
- 'SPLEEN': ['Spl'],
- 'NUCLEUS ACCUMBENS': ['Nac'],
- 'NEOCORTEX': ['Ctx'],
- 'ADIPOSE': ['Wfat'],
- 'RETINA': ['Ret']
- }